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Author Details

Xiaoqin Zou
Dalton Cardiovascular Research Center, University of Missouri
2001
93
32
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36534283Computational Modeling of IN-CTD/TAR Complex to Elucidate Additional Strategies to Inhibit HIV-1 Replication.Methods Mol Biol2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
37283068Template-guided method for protein-ligand complex structure prediction: Application to CASP15 protein-ligand studies.Proteins2023
37087791Ginkgo biloba extract attenuates cisplatin-induced renal interstitial fibrosis by inhibiting the activation of renal fibroblasts through down-regulating the HIF-1α/STAT3/IL-6 pathway in renal tubular epithelial cells.Phytomedicine2023
36580595Opinion: Protein folds vs. protein folding: Differing questions, different challenges.Proc Natl Acad Sci U S A2023
37365936Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.Proteomics2023
36534283Computational Modeling of IN-CTD/TAR Complex to Elucidate Additional Strategies to Inhibit HIV-1 Replication.Methods Mol Biol2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
37087791Ginkgo biloba extract attenuates cisplatin-induced renal interstitial fibrosis by inhibiting the activation of renal fibroblasts through down-regulating the HIF-1α/STAT3/IL-6 pathway in renal tubular epithelial cells.Phytomedicine2023
37283068Template-guided method for protein-ligand complex structure prediction: Application to CASP15 protein-ligand studies.Proteins2023
37365936Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.Proteomics2023
36580595Opinion: Protein folds vs. protein folding: Differing questions, different challenges.Proc Natl Acad Sci U S A2023
34931833Predicting Protein-Peptide Complex Structures by Accounting for Peptide Flexibility and the Physicochemical Environment.J Chem Inf Model2022
36351900An allosteric modulator activates BK channels by perturbing coupling between Ca<sup>2+</sup> binding and pore opening.Nat Commun2022
36543893Author Correction: A PIP<sub>2</sub> substitute mediates voltage sensor-pore coupling in KCNQ activation.Commun Biol2022
35189929Ginkgo biloba leaf extract mitigates cisplatin-induced chronic renal interstitial fibrosis by inhibiting the epithelial-mesenchymal transition of renal tubular epithelial cells mediated by the Smad3/TGF-β1 and Smad3/p38 MAPK pathways.Chin Med2022
34931833Predicting Protein-Peptide Complex Structures by Accounting for Peptide Flexibility and the Physicochemical Environment.J Chem Inf Model2022
36543893Author Correction: A PIP<sub>2</sub> substitute mediates voltage sensor-pore coupling in KCNQ activation.Commun Biol2022
36351900An allosteric modulator activates BK channels by perturbing coupling between Ca<sup>2+</sup> binding and pore opening.Nat Commun2022
35189929Ginkgo biloba leaf extract mitigates cisplatin-induced chronic renal interstitial fibrosis by inhibiting the epithelial-mesenchymal transition of renal tubular epithelial cells mediated by the Smad3/TGF-β1 and Smad3/p38 MAPK pathways.Chin Med2022
33978756The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity.Nucleic Acids Res2021
33692901Ginaton injection alleviates cisplatin-induced renal interstitial fibrosis in rats via inhibition of apoptosis through regulation of the p38MAPK/TGF-β1 and p38MAPK/HIF-1α pathways.Biomed Rep2021
33990467Modulating the voltage sensor of a cardiac potassium channel shows antiarrhythmic effects.Proc Natl Acad Sci U S A2021
33980829INI1/SMARCB1 Rpt1 domain mimics TAR RNA in binding to integrase to facilitate HIV-1 replication.Nat Commun2021
33978756The three-way junction structure of the HIV-1 PBS-segment binds host enzyme important for viral infectivity.Nucleic Acids Res2021
33759135MDock: A Suite for Molecular Inverse Docking and Target Prediction.Methods Mol Biol2021
33651624Rapid Identification of Inhibitors and Prediction of Ligand Selectivity for Multiple Proteins: Application to Protein Kinases.J Phys Chem B2021
34385105Panax notoginseng saponins reduces the cisplatin-induced acute renal injury by increasing HIF-1α/BNIP3 to inhibit mitochondrial apoptosis pathway.Biomed Pharmacother2021
34366717Carbohydrate-Protein Interactions: Advances and Challenges.Commun Inf Syst2021
34809457A Selective Tether Recruits Activated Response Regulator CheB to Its Chemoreceptor Substrate.mBio2021
33651624Rapid Identification of Inhibitors and Prediction of Ligand Selectivity for Multiple Proteins: Application to Protein Kinases.J Phys Chem B2021
33759135MDock: A Suite for Molecular Inverse Docking and Target Prediction.Methods Mol Biol2021
33692901Ginaton injection alleviates cisplatin-induced renal interstitial fibrosis in rats via inhibition of apoptosis through regulation of the p38MAPK/TGF-β1 and p38MAPK/HIF-1α pathways.Biomed Rep2021
34385105Panax notoginseng saponins reduces the cisplatin-induced acute renal injury by increasing HIF-1α/BNIP3 to inhibit mitochondrial apoptosis pathway.Biomed Pharmacother2021
34809457A Selective Tether Recruits Activated Response Regulator CheB to Its Chemoreceptor Substrate.mBio2021
33990467Modulating the voltage sensor of a cardiac potassium channel shows antiarrhythmic effects.Proc Natl Acad Sci U S A2021
34366717Carbohydrate-Protein Interactions: Advances and Challenges.Commun Inf Syst2021
33980829INI1/SMARCB1 Rpt1 domain mimics TAR RNA in binding to integrase to facilitate HIV-1 replication.Nat Commun2021
32483825Performance of human and server prediction in CAPRI rounds 38-45.Proteins2020
32015334Two-stage electro-mechanical coupling of a K<sub>V</sub> channel in voltage-dependent activation.Nat Commun2020
31793016PepPro: A Nonredundant Structure Data Set for Benchmarking Peptide-Protein Computational Docking.J Comput Chem2020
31943114Binding interface and impact on protease cleavage for an RNA aptamer to HIV-1 reverse transcriptase.Nucleic Acids Res2020
32483825Performance of human and server prediction in CAPRI rounds 38-45.Proteins2020
32205836Rhubarb and Astragalus Capsule Attenuates Renal Interstitial Fibrosis in Rats with Unilateral Ureteral Obstruction by Alleviating Apoptosis through Regulating Transforming Growth Factor beta1 (TGF-β1)/p38 Mitogen-Activated Protein Kinases (p38 MAPK) Pathway.Med Sci Monit2020
31805819TRIC-A Channel Maintains Store Calcium Handling by Interacting With Type 2 Ryanodine Receptor in Cardiac Muscle.Circ Res2020
33867869Scoring Functions for Protein-RNA Complex Structure Prediction: Advances, Applications, and Future Directions.Commun Inf Syst2020
32525981Structural basis of prostate-specific membrane antigen recognition by the A9g RNA aptamer.Nucleic Acids Res2020
32678288A PIP<sub>2</sub> substitute mediates voltage sensor-pore coupling in KCNQ activation.Commun Biol2020
32621230MDockPeP: A Web Server for Blind Prediction of Protein-Peptide Complex Structures.Methods Mol Biol2020
33867869Scoring Functions for Protein-RNA Complex Structure Prediction: Advances, Applications, and Future Directions.Commun Inf Syst2020
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Collaborators

Sheng-You Huang
Huazhong University of Science and Technology
Co-authored papers 30
Xianjin Xu
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 25
Liming Qiu
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 13
Chengfei Yan
Huazhong University of Science and Technology
Co-authored papers 12
Zhiwei Ma
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 10
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 7
Juan Fern??ndez-Recio
Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)
Co-authored papers 7
Alexandre M J J Bonvin
Bijvoet Center for Biomolecular Research, Utrecht University
Co-authored papers 7
Rui Duan
Co-authored papers 7
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 6
Dima Kozakov
Stony Brook University
Co-authored papers 6
Daisuke Kihara
Purdue University
Co-authored papers 6
Zhiping Weng
University of Massachusetts Medical School
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Sandor Vajda
Boston University
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Paul A Bates
The Francis Crick Institute
Co-authored papers 5
Genki Terashi
Co-authored papers 5
Chaok Seok
Seoul National University
Co-authored papers 5
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 5
Thom Vreven
Visterra Inc.
Co-authored papers 5
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 5
Panagiotis L Kastritis
Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg
Co-authored papers 4
Marc F Lensink
University Lille, CNRS
Co-authored papers 4
Hasup Lee
Seoul National University
Co-authored papers 4
Jeffrey J Gray
Johns Hopkins University
Co-authored papers 4
Sameer Velankar
European Bioinformatics Institute
Co-authored papers 4
Huan-Xiang Zhou
University of Illinois Chicago
Co-authored papers 4
Ilya A Vakser
The University of Kansas
Co-authored papers 4
Shan Chang
Co-authored papers 4
Julie C Mitchell
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Dmitri Beglov
Boston University
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Release 1.2