Author details

Full Name

Victor Ruotti

Affiliation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37864136	Rational probe design for efficient rRNA depletion and improved metatranscriptomic analysis of human microbiomes.		2023
28343999	A Genome-wide Analysis of Human Pluripotent Stem Cell-Derived Endothelial Cells in 2D or 3D Culture.	Stem Cell Reports	2017
27346250	Information recovery from low coverage whole-genome bisulfite sequencing.	Nat Commun	2016
27347755	Saturation analysis for whole-genome bisulfite sequencing data.	Nat Biotechnol	2016
23428641	EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments.	Bioinformatics	2013
21983960	Proteomic and phosphoproteomic comparison of human ES and iPS cells.	Nat Methods	2011
21478862	Chemically defined conditions for human iPSC derivation and culture.	Nat Methods	2011
22064688	Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA.	Journal of Visualized Experiments	2011
20452322	Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.	Cell Stem Cell	2010
21143212	Highly consistent, fully representative mRNA-Seq libraries from ten nanograms of total RNA.	BioTechniques	2010
20022975	RNA-Seq gene expression estimation with read mapping uncertainty.		2010
19829295	Human DNA methylomes at base resolution show widespread epigenomic differences.	Nature	2009
19351619	ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches.	Bioinformatics	2009
18922365	Molecular profiling reveals similarities and differences between primitive subsets of hematopoietic cells generated in vitro from human embryonic stem cells and in vivo during embryogenesis.	Exp Hematol	2008
18385155	A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets.	Nucleic Acids Res	2008
18371364	Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells.	Cell Stem Cell	2007
18029452	Induced pluripotent stem cell lines derived from human somatic cells.	Science	2007
15980493	DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.	Nucleic Acids Research	2005
16106031	Tools and strategies for physiological genomics: the Rat Genome Database.	Physiol Genomics	2005
15215467	ProMoST (Protein Modification Screening Tool): a web-based tool for mapping protein modifications on two-dimensional gels.	Nucleic Acids Research	2004
15060006	Integrative genomics: in silico coupling of rat physiology and complex traits with mouse and human data.	Genome Res	2004
15113398	ChromSorter PC: a database of chromosomal regions associated with human prostate cancer.	BMC Genomics	2004
15602916	Automated analysis of conserved syntenies for the zebrafish genome.	Methods Cell Biol	2004