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Author Details

Michael Ryan
The University of Texas MD Anderson Cancer Center
2007
31
24
PMIDPaper TitleJournal TitlePublished Year
30665944Splicing factor <i>ESRP1</i> controls ER-positive breast cancer by altering metabolic pathways.EMBO Rep2019
30665944Splicing factor <i>ESRP1</i> controls ER-positive breast cancer by altering metabolic pathways.EMBO Rep2019
29438696The Integrated Genomic Landscape of Thymic Epithelial Tumors.Cancer Cell2018
29438696The Integrated Genomic Landscape of Thymic Epithelial Tumors.Cancer Cell2018
29092932A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data.Cancer Res2017
29045845Revealing the Determinants of Widespread Alternative Splicing Perturbation in Cancer.Cell Rep2017
29092935CRAVAT 4: Cancer-Related Analysis of Variants Toolkit.Cancer Res2017
29092932A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data.Cancer Res2017
29416646Radiation-induced alternative transcripts as detected in total and polysome-bound mRNA.Oncotarget2017
29416646Radiation-induced alternative transcripts as detected in total and polysome-bound mRNA.Oncotarget2017
29045845Revealing the Determinants of Widespread Alternative Splicing Perturbation in Cancer.Cell Rep2017
29092935CRAVAT 4: Cancer-Related Analysis of Variants Toolkit.Cancer Res2017
27168766Distinct epigenetic features of differentiation-regulated replication origins.Epigenetics Chromatin2016
27197156Exome-Scale Discovery of Hotspot Mutation Regions in Human Cancer Using 3D Protein Structure.Cancer Res2016
27272143A replicator-specific binding protein essential for site-specific initiation of DNA replication in mammalian cells.Nat Commun2016
27168766Distinct epigenetic features of differentiation-regulated replication origins.Epigenetics Chromatin2016
26442818Assessing the Pathogenicity of Insertion and Deletion Variants with the Variant Effect Scoring Tool (VEST-Indel).Hum Mutat2016
26602693TCGASpliceSeq a compendium of alternative mRNA splicing in cancer.Nucleic Acids Res2016
26602693TCGASpliceSeq a compendium of alternative mRNA splicing in cancer.Nucleic Acids Res2016
26442818Assessing the Pathogenicity of Insertion and Deletion Variants with the Variant Effect Scoring Tool (VEST-Indel).Hum Mutat2016
27272143A replicator-specific binding protein essential for site-specific initiation of DNA replication in mammalian cells.Nat Commun2016
27197156Exome-Scale Discovery of Hotspot Mutation Regions in Human Cancer Using 3D Protein Structure.Cancer Res2016
25965571Telomere dysfunction drives aberrant hematopoietic differentiation and myelodysplastic syndrome.Cancer Cell2015
25887597ColoWeb: a resource for analysis of colocalization of genomic features.BMC Genomics2015
25879486The DNA repair endonuclease Mus81 facilitates fast DNA replication in the absence of exogenous damage.Nat Commun2015
25965571Telomere dysfunction drives aberrant hematopoietic differentiation and myelodysplastic syndrome.Cancer Cell2015
25887597ColoWeb: a resource for analysis of colocalization of genomic features.BMC Genomics2015
25879486The DNA repair endonuclease Mus81 facilitates fast DNA replication in the absence of exogenous damage.Nat Commun2015
24787348Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organization.PLoS Genet2014
25447077Mapping replication origin sequences in eukaryotic chromosomes.Curr Protoc Cell Biol2014
25181303Best practices for mapping replication origins in eukaryotic chromosomes.Curr Protoc Cell Biol2014
24787348Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organization.PLoS Genet2014
25447077Mapping replication origin sequences in eukaryotic chromosomes.Curr Protoc Cell Biol2014
25181303Best practices for mapping replication origins in eukaryotic chromosomes.Curr Protoc Cell Biol2014
23325621CRAVAT: cancer-related analysis of variants toolkit.Bioinformatics2013
23754963Methylation of histone H3 on lysine 79 associates with a group of replication origins and helps limit DNA replication once per cell cycle.PLoS Genet2013
23793516MuPIT interactive: webserver for mapping variant positions to annotated, interactive 3D structures.Hum Genet2013
23786772Transcription poisoning by Topoisomerase I is controlled by gene length, splice sites, and miR-142-3p.Cancer Res2013
23325621CRAVAT: cancer-related analysis of variants toolkit.Bioinformatics2013
23793516MuPIT interactive: webserver for mapping variant positions to annotated, interactive 3D structures.Hum Genet2013
23786772Transcription poisoning by Topoisomerase I is controlled by gene length, splice sites, and miR-142-3p.Cancer Res2013
23754963Methylation of histone H3 on lysine 79 associates with a group of replication origins and helps limit DNA replication once per cell cycle.PLoS Genet2013
22820202SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts.Bioinformatics2012
22820202SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts.Bioinformatics2012
21685053CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer.Bioinformatics2011
21813623Genome-wide depletion of replication initiation events in highly transcribed regions.Genome Res2011
21685053CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer.Bioinformatics2011
21813623Genome-wide depletion of replication initiation events in highly transcribed regions.Genome Res2011
20215517Exon array analyses across the NCI-60 reveal potential regulation of TOP1 by transcription pausing at guanosine quartets in the first intron.Cancer Res2010
20817775Genome-wide analysis of novel splice variants induced by topoisomerase I poisoning shows preferential occurrence in genes encoding splicing factors.Cancer Res2010
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Collaborators

John N Weinstein
The University of Texas MD Anderson Cancer Center
Co-authored papers 10
Mirit I Aladjem
National Cancer Institute, Center for Cancer Research
Co-authored papers 9
RyangGuk Kim
College of Computing and Informatics, University of North Carolina at Charlotte
Co-authored papers 9
Rachel Karchin
Johns Hopkins University
Co-authored papers 7
Haiqing Fu
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 6
Hongfang Liu
Mayo Clinic
Co-authored papers 6
Chii Mei Lin
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 6
Barry R Zeeberg
Co-authored papers 6
Yves Pommier
Center for Cancer Research, National Cancer Institute
Co-authored papers 6
Melvenia M Martin
Center for Cancer Research
Co-authored papers 5
William C Reinhold
Center for Cancer Research, National Cancer Institute
Co-authored papers 4
Mark Diekhans
Genomics Institute, University of California Santa Cruz
Co-authored papers 4
Ari Kahn
Co-authored papers 4
Rehan Akbani
The University of Texas MD Anderson Cancer Center
Co-authored papers 3
David N Cooper
Institute of Medical Genetics, Cardiff University
Co-authored papers 3
Peter D Stenson
Co-authored papers 3
Hannah Carter
University of California San Diego
Co-authored papers 2
Sudhir Varma
Center for Cancer Research, National Cancer Institute
Co-authored papers 2
D Curtis Jamison
Co-authored papers 2
James H Doroshow
National Cancer Institute, National Institutes of Health
Co-authored papers 2
St??phanie Solier
Gustave Roussy Cancer Center, INSERM U1170
Co-authored papers 2
Emilie Besnard
Gladstone Institute of Virology, Gladstone Institutes
Co-authored papers 2
James A Cleland
Co-authored papers 2
Peter J Munson
and Blood Institute, National Institutes of Health
Co-authored papers 2
Kurt W Kohn
Center for Cancer Research, National Cancer Institute
Co-authored papers 2
Eric E Bouhassira
Albert Einstein College of Medicine
Co-authored papers 2
David W Kane
Co-authored papers 2
Sven Bilke
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Co-authored papers 1
Song Yi
Livestrong Cancer Institutes, Dell Medical School, The University of Texas at Austin
Co-authored papers 1
William Stafford Noble
Co-authored papers 1
Release 1.2