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Author Details

John V Pearson
QIMR Berghofer Medical Research Institute
1996
101
46
PMIDPaper TitleJournal TitlePublished Year
36757207Efficient detection and monitoring of pediatric brain malignancies with liquid biopsy based on patient-specific somatic mutation screening.Neuro Oncol2023
36656928Heritable defects in telomere and mitotic function selectively predispose to sarcomas.Science2023
37149669Generalising uncertainty improves accuracy and safety of deep learning analytics applied to oncology.Sci Rep2023
36757207Efficient detection and monitoring of pediatric brain malignancies with liquid biopsy based on patient-specific somatic mutation screening.Neuro Oncol2023
36868206Australian Genomics: Outcomes of a 5-year national program to accelerate the integration of genomics in healthcare.Am J Hum Genet2023
37149669Generalising uncertainty improves accuracy and safety of deep learning analytics applied to oncology.Sci Rep2023
36656928Heritable defects in telomere and mitotic function selectively predispose to sarcomas.Science2023
36868206Australian Genomics: Outcomes of a 5-year national program to accelerate the integration of genomics in healthcare.Am J Hum Genet2023
35012638Patient-derived xenograft models capture genomic heterogeneity in endometrial cancer.Genome Med2022
36098958Comparative Genomics Provides Etiologic and Biological Insight into Melanoma Subtypes.Cancer Discov2022
36291058Identifying Candidate Circulating RNA Markers for Coronary Artery Disease by Deep RNA-Sequencing in Human Plasma.Cells2022
36095262Analysis of hereditary cancer gene variant classifications from ClinVar indicates a need for regular reassessment of clinical assertions.Hum Mutat2022
36222710Gene-Expression Profiling of Mucinous Ovarian Tumors and Comparison with Upper and Lower Gastrointestinal Tumors Identifies Markers Associated with Adverse Outcomes.Clin Cancer Res2022
35637530Comprehensive genomic and tumour immune profiling reveals potential therapeutic targets in malignant pleural mesothelioma.Genome Med2022
36332611Shariant platform: Enabling evidence sharing across Australian clinical genetic-testing laboratories to support variant interpretation.Am J Hum Genet2022
35355015Anatomic position determines oncogenic specificity in melanoma.Nature2022
35849877Comparison of actionable events detected in cancer genomes by whole-genome sequencing, in silico whole-exome and mutation panels.ESMO Open2022
36699384qmotif: determination of telomere content from whole-genome sequence data.Bioinform Adv2022
35012638Patient-derived xenograft models capture genomic heterogeneity in endometrial cancer.Genome Med2022
34951955Multiomic profiling of checkpoint inhibitor-treated melanoma: Identifying predictors of response and resistance, and markers of biological discordance.Cancer Cell2022
35637530Comprehensive genomic and tumour immune profiling reveals potential therapeutic targets in malignant pleural mesothelioma.Genome Med2022
35849877Comparison of actionable events detected in cancer genomes by whole-genome sequencing, in silico whole-exome and mutation panels.ESMO Open2022
35355015Anatomic position determines oncogenic specificity in melanoma.Nature2022
36699384qmotif: determination of telomere content from whole-genome sequence data.Bioinform Adv2022
36332611Shariant platform: Enabling evidence sharing across Australian clinical genetic-testing laboratories to support variant interpretation.Am J Hum Genet2022
36098958Comparative Genomics Provides Etiologic and Biological Insight into Melanoma Subtypes.Cancer Discov2022
36095262Analysis of hereditary cancer gene variant classifications from ClinVar indicates a need for regular reassessment of clinical assertions.Hum Mutat2022
36291058Identifying Candidate Circulating RNA Markers for Coronary Artery Disease by Deep RNA-Sequencing in Human Plasma.Cells2022
36222710Gene-Expression Profiling of Mucinous Ovarian Tumors and Comparison with Upper and Lower Gastrointestinal Tumors Identifies Markers Associated with Adverse Outcomes.Clin Cancer Res2022
34951955Multiomic profiling of checkpoint inhibitor-treated melanoma: Identifying predictors of response and resistance, and markers of biological discordance.Cancer Cell2022
34579788Deep learning in cancer diagnosis, prognosis and treatment selection.Genome Med2021
33811161Radiomics Biomarkers Correlate with CD8 Expression and Predict Immune Signatures in Melanoma Patients.Mol Cancer Res2021
33514769Verifying explainability of a deep learning tissue classifier trained on RNA-seq data.Sci Rep2021
33600021Considerations for using population frequency data in germline variant interpretation: Cancer syndrome genes as a model.Hum Mutat2021
33917078Tumor Signature Analysis Implicates Hereditary Cancer Genes in Endometrial Cancer Development.Cancers (Basel)2021
34579788Deep learning in cancer diagnosis, prognosis and treatment selection.Genome Med2021
34732514Ask the people: developing guidelines for genomic research with Aboriginal and Torres Strait Islander peoples.BMJ Glob Health2021
33600021Considerations for using population frequency data in germline variant interpretation: Cancer syndrome genes as a model.Hum Mutat2021
33514769Verifying explainability of a deep learning tissue classifier trained on RNA-seq data.Sci Rep2021
33811161Radiomics Biomarkers Correlate with CD8 Expression and Predict Immune Signatures in Melanoma Patients.Mol Cancer Res2021
33917078Tumor Signature Analysis Implicates Hereditary Cancer Genes in Endometrial Cancer Development.Cancers (Basel)2021
34732514Ask the people: developing guidelines for genomic research with Aboriginal and Torres Strait Islander peoples.BMJ Glob Health2021
32384699<i>APC</i> Mutation Marks an Aggressive Subtype of <i>BRAF</i> Mutant Colorectal Cancers.Cancers (Basel)2020
32415113Whole genome landscapes of uveal melanoma show an ultraviolet radiation signature in iris tumours.Nat Commun2020
31935636Alterations in signaling pathways that accompany spontaneous transition to malignancy in a mouse model of BRAF mutant microsatellite stable colorectal cancer.Neoplasia2020
32384699<i>APC</i> Mutation Marks an Aggressive Subtype of <i>BRAF</i> Mutant Colorectal Cancers.Cancers (Basel)2020
32818150Using whole-genome sequencing data to derive the homologous recombination deficiency scores.NPJ Breast Cancer2020
32917657Tumor Mutation Burden and Structural Chromosomal Aberrations Are Not Associated with T-cell Density or Patient Survival in Acral, Mucosal, and Cutaneous Melanomas.Cancer Immunol Res2020
33067454Whole-genome sequencing of acral melanoma reveals genomic complexity and diversity.Nat Commun2020
31935636Alterations in signaling pathways that accompany spontaneous transition to malignancy in a mouse model of BRAF mutant microsatellite stable colorectal cancer.Neoplasia2020
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Collaborators

Nicola Waddell
QIMR Berghofer Medical Research Institute
Co-authored papers 68
Katia Nones
QIMR Berghofer Medical Research Institute
Co-authored papers 41
Ann-Marie Patch
QIMR Berghofer Medical Research Institute
Co-authored papers 41
Sean M Grimmond
The University of Melbourne
Co-authored papers 30
David W Craig
University of Southern California
Co-authored papers 21
Karin S Kassahn
Adelaide Medical School, The University of Adelaide
Co-authored papers 17
Nicholas K Hayward
QIMR Berghofer Medical Research Institute
Co-authored papers 15
J Lynn Fink
The University of Queensland Diamantina Institute, The University of Queensland
Co-authored papers 15
Matthew J Huentelman
The Translational Genomics Research Institute (TGen)
Co-authored papers 14
Richard A Scolyer
Co-authored papers 13
Amber L Johns
Garvan Institute of Medical Research and The Kinghorn Cancer Centre
Co-authored papers 13
Mark J Cowley
Children's Cancer Institute, Lowy Cancer Research Centre
Co-authored papers 12
Eric M Reiman
Banner Alzheimer's Institute
Co-authored papers 11
Georgina V Long
Co-authored papers 10
Peter T Simpson
UQ Centre for Clinical Research, The University of Queensland
Co-authored papers 9
Sunil R Lakhani
University of Queensland
Co-authored papers 8
Szabolcs Szelinger
College of American Pathologists
Co-authored papers 8
Nikolajs Zeps
Queensland University of Technology
Co-authored papers 8
Amanda B Spurdle
QIMR Berghofer Medical Research Institute
Co-authored papers 7
William A Robinson
National Centre for Asbestos Related Diseases, University of Western Australia
Co-authored papers 6
David A Wheeler
Baylor College of Medicine
Co-authored papers 6
Paul Harnett
Westmead Clinical School, University of Sydney
Co-authored papers 6
David D L Bowtell
Peter MacCallum Cancer Centre
Co-authored papers 6
Anna DeFazio
Westmead Hospital
Co-authored papers 6
Catherine J Kennedy
The Westmead Institute for Medical Research, University of Sydney
Co-authored papers 6
Yoke-Eng Chiew
Westmead Hospital
Co-authored papers 5
Richard A Gibbs
Baylor College of Medicine
Co-authored papers 5
Dariush Etemadmoghadam
Peter MacCallum Cancer Centre
Co-authored papers 5
Sian Fereday
Peter MacCallum Cancer Centre
Co-authored papers 5
Joy Hendley
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Co-authored papers 4
Release 1.2