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Author Details

Billy K Poon
Lawrence Berkeley National Laboratory
2006
28
15
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38036854AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination.Nat Methods2024
36762856In situ ligand restraints from quantum-mechanical methods.Acta Crystallogr D Struct Biol2023
37942718Improved joint X-ray and neutron refinement procedure in Phenix.Acta Crystallogr D Struct Biol2023
36876433Accelerating crystal structure determination with iterative AlphaFold prediction.Acta Crystallogr D Struct Biol2023
35105059Sizes of pure and doped helium droplets from single shot x-ray imaging.J Chem Phys2022
36266465Improved AlphaFold modeling with implicit experimental information.Nat Methods2022
36322415Putting AlphaFold models to work with phenix.process_predicted_model and ISOLDE.Acta Crystallogr D Struct Biol2022
35149213Integration of software tools for integrative modeling of biomolecular systems.J Struct Biol2022
33404525CERES: a cryo-EM re-refinement system for continuous improvement of deposited models.Acta Crystallogr D Struct Biol2021
30988261Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB).Acta Crystallogr D Struct Biol2019
31588918Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.Acta Crystallogr D Struct Biol2019
31279069Cryo_fit: Democratization of flexible fitting for cryo-EM.J Struct Biol2019
28901593Interactive comparison and remediation of collections of macromolecular structures.Protein Sci2018
30198894New tools for the analysis and validation of cryo-EM maps and atomic models.Acta Crystallogr D Struct Biol2018
29872004Real-space refinement in PHENIX for cryo-EM and crystallography.Acta Crystallogr D Struct Biol2018
30277481Free-electron laser data for multiple-particle fluctuation scattering analysis.Sci Data2018
28177311Polder maps: improving OMIT maps by excluding bulk solvent.Acta Crystallogr D Struct Biol2017
25146284Helium superfluidity. Shapes and vorticities of superfluid helium nanodroplets.Science2014
23778093Three-dimensional single-particle imaging using angular correlations from X-ray laser data.Acta Crystallogr A2013
22898947Structure determination of Pt-coated Au dumbbells via fluctuation X-ray scattering.J Synchrotron Radiat2012
22893239Computation of fluctuation scattering profiles via three-dimensional Zernike polynomials.Acta Crystallogr A2012
20502598Autoindexing with outlier rejection and identification of superimposed lattices.J Appl Crystallogr2010
20445225Detection and correction of underassigned rotational symmetry prior to structure deposition.Acta Crystallogr D Biol Crystallogr2010
19307715Structural improvement of unliganded simian immunodeficiency virus gp120 core by normal-mode-based X-ray crystallographic refinement.Acta Crystallogr D Biol Crystallogr2009
19564683Application of normal-mode refinement to X-ray crystal structures at the lower resolution limit.Acta Crystallogr D Biol Crystallogr2009
17470791Normal mode refinement of anisotropic thermal parameters for a supramolecular complex at 3.42-A crystallographic resolution.Proc Natl Acad Sci U S A2007
17698000Normal-mode refinement of anisotropic thermal parameters for potassium channel KcsA at 3.2 A crystallographic resolution.Structure2007
21760758A New Method for Coarse-Grained Elastic Normal-Mode Analysis.J Chem Theory Comput2006
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Collaborators

Paul D Adams
Lawrence Berkeley National Laboratory
Co-authored papers 14
Thomas C Terwilliger
Los Alamos National Laboratory
Co-authored papers 8
Randy J Read
Cambridge Institute for Medical Research, University of Cambridge
Co-authored papers 6
Irina Persikova
The State University of New Jersey
Co-authored papers 1
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Stephen K Burley
The State University of New Jersey
Co-authored papers 1
Aleksandras Gutmanas
European Bioinformatics Institute
Co-authored papers 1
Doo Nam Kim
Pacific Northwest National Laboratory
Co-authored papers 1
Clemens Vonrhein
Global Phasing Ltd
Co-authored papers 1
Yuhe Liang
The State University of New Jersey
Co-authored papers 1
Matthew L Baker
McGovern Medical School at the University of Texas Health Science Center
Co-authored papers 1
Benjamin Webb
University of California san francisco
Co-authored papers 1
Matthew Hancock
University of California san francisco
Co-authored papers 1
Sameer Velankar
European Bioinformatics Institute
Co-authored papers 1
Jeffrey C Hoch
University of Connecticut Health Center
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Helen M Berman
The State University of New Jersey
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John D Westbrook
The State University of New Jersey
Co-authored papers 1
Eldon L Ulrich
University of Wisconsin-Madison
Co-authored papers 1
Thomas-Otavio Peulen
Heinrich Heine University Dusseldorf
Co-authored papers 1
James S Fraser
University of California san francisco
Co-authored papers 1
John L Markley
University of Wisconsin-Madison
Co-authored papers 1
Jasmine Young
The State University of New Jersey
Co-authored papers 1
Li-Wei Hung
Los Alamos National Laboratory
Co-authored papers 1
Petra Fromme
Biodesign Center for Applied Structural Discovery, Arizona State University
Co-authored papers 1
Ezra Peisach
The State University of New Jersey
Co-authored papers 1
Zukang Feng
The State University of New Jersey
Co-authored papers 1
Genji Kurisu
Institute for Protein Research, Osaka University
Co-authored papers 1
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