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Author Details

Mihaela Pertea
Center for Computational Biology, Johns Hopkins University
1987
93
34
Gloria M Sheynkman (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36630290The first gapless, reference-quality, fully annotated genome from a Southern Han Chinese individual.G3 (Bethesda)2023
37629718Polymicrobial Bacterial Meningitis in a Patient with Chronic Suppurative Otitis Media: Case Report and Literature Review.Medicina (Kaunas)2023
37904256CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure.Genome Biol2023
37794265The status of the human gene catalogue.Nature2023
37546880Splam: a deep-learning-based splice site predictor that improves spliced alignments.bioRxiv2023
37546854Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.bioRxiv2023
37940654EASTR: Identifying and eliminating systematic alignment errors in multi-exon genes.Nat Commun2023
37577699Major data analysis errors invalidate cancer microbiome findings.bioRxiv2023
37503064Detecting differential transcript usage in complex diseases with SPIT.bioRxiv2023
37570412The Use of 3D Technology in the Management of Residual Asymmetry following Orthognathic Surgery: A Case Report.Healthcare (Basel)2023
37811944Major data analysis errors invalidate cancer microbiome findings.mBio2023
36993373Investigating Open Reading Frames in Known and Novel Transcripts using ORFanage.bioRxiv2023
36980511Rare Benign Tumors and Tumor-like Lesions of the Hand without Skin Damage-Clinical, Imagistic and Histopathological Diagnosis, Retrospective Study.Diagnostics (Basel)2023
37108973Biomechanical Comparison of Conventional Plate and the C-Nail<sup>®</sup> System for the Treatment of Displaced Intra-Articular Calcaneal Fractures: A Finite Element Analysis.J Pers Med2023
36994150The status of the human gene catalogue.ArXiv2023
34897437A reference-quality, fully annotated genome from a Puerto Rican individual.Genetics2022
35741129Schwannoma of the Upper Limb: Retrospective Study of a Rare Tumor with Uncommon Locations.Diagnostics (Basel)2022
35648784Improved transcriptome assembly using a hybrid of long and short reads with StringTie.PLoS Comput Biol2022
35731869Temozolomide-induced guanine mutations create exploitable vulnerabilities of guanine-rich DNA and RNA regions in drug-resistant gliomas.Sci Adv2022
35601069Reconstructive challenges of sinonasal tumors: A case report.Exp Ther Med2022
35454313Pain Intensity and Degree of Disability after Fragility Fractures of the Pelvis.Medicina (Kaunas)2022
36519529Structure-guided isoform identification for the human transcriptome.Elife2022
36181018Floating-dislocated elbow in adults: Case reports and literature review.Medicine (Baltimore)2022
36365079Antioxidant, Antimicrobial, and Kinetic Studies of ο-Cyclodextrin Crosslinked with Lignin for Drug Delivery.Pharmaceutics2022
36291975Atypical Sites of the Lipoma on the Hand and Fingers: Clinical and Imaging Features and Surgical Outcomes.Diagnostics (Basel)2022
33361112Effects of transcriptional noise on estimates of gene and transcript expression in RNA sequencing experiments.Genome Res2021
33787638Arterial only anastomosis associated with modified Baudet technique in ear replantation: Case reports and literature review.Medicine (Baltimore)2021
34559139Utility of "reposition-flap" in the reconstruction of the avulsed thumb.Medicine (Baltimore)2021
34434278Omega plate for the treatment of acetabular fractures involving the quadrilateral plate.Exp Ther Med2021
34609426Clinical, histopathological and immunohistochemical features of glomus tumor of the nail bed.Rom J Morphol Embryol2021
33964128TieBrush: an efficient method for aggregating and summarizing mapped reads across large datasets.Bioinformatics2021
33983397Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie.Genetics2021
33429943Raman Spectroscopy, X-ray Diffraction, and Scanning Electron Microscopy as Noninvasive Methods for Microstructural Alterations in Psoriatic Nails.Molecules2021
31075991Calcific uremic arteriolopathy (calciphylaxis) calls into question the validity of guidelines of diagnosis and treatment.J Dermatolog Treat2020
33544797Idiopathic tenosynovitis with rice bodies.Rom J Morphol Embryol2020
31976181New insights into human hair: SAXS, SEM, TEM and EDX for Alopecia Areata investigations.PeerJ2020
33065666Treatment of Displaced Intra-articular Calcaneal Fractures With an Interlocking Nail (C-Nail).J Orthop Trauma2020
32995774Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie.bioRxiv2020
32702832Value of ultrasonography in the diagnosis of carpal tunnel syndrome-a new ultrasonographic index in carpal tunnel syndrome diagnosis: A clinical study.Medicine (Baltimore)2020
32404504Single-cell transcriptional landscapes reveal HIV-1-driven aberrant host gene transcription as a potential therapeutic target.Sci Transl Med2020
32487205Assembly and annotation of an Ashkenazi human reference genome.Genome Biol2020
31064768Human contamination in bacterial genomes has created thousands of spurious proteins.Genome Res2019
31842956Transcriptome assembly from long-read RNA-seq alignments with StringTie2.Genome Biol2019
31234525β-Cyclodextrin as a Functional Excipient Used for Enhancing the Diminazene Aceturate Bioavailability.Pharmaceutics2019
30486838CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise.Genome Biol2018
28407485Defective HIV-1 Proviruses Are Expressed and Can Be Recognized by Cytotoxic T Lymphocytes, which Shape the Proviral Landscape.Cell Host Microbe2017
27560171Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.Nat Protoc2016
25561180Broad CTL response is required to clear latent HIV-1 due to dominance of escape mutations.Nature2015
26290535Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms.Genome Res2015
25904279Severe thoracic impalement injury: Survival in a case with delayed surgical definitive care.Ulus Travma Acil Cerrahi Derg2015
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Collaborators

Center for Computational Biology, Johns Hopkins University
Co-authored papers 50
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 11
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 11
The Institute for Genomic Research
Co-authored papers 9
Broad Institute of MIT and Harvard
Co-authored papers 8
Broad Institute of MIT and Harvard
Co-authored papers 8
J. Craig Venter Institute
Co-authored papers 7
Center for Computational Biology, Johns Hopkins School of Medicine
Co-authored papers 6
Center for Biomolecular Science and Engineering, University of California
Co-authored papers 5
Clinical Center
Co-authored papers 5
Center for Computational Biology, Johns Hopkins University
Co-authored papers 5
The J. Craig Venter Institute
Co-authored papers 5
Center for Genomics and Systems Biology
Co-authored papers 5
Personal Genome Diagnostics Inc.
Co-authored papers 5
Macquarie University
Co-authored papers 4
US Military Malaria Vaccine Program, Naval Medical Research Center
Co-authored papers 4
Inc., 9800 Medical Center Drive
Co-authored papers 4
Institute for Genome Research
Co-authored papers 4
International Livestock Research Institute (ILRI)
Co-authored papers 4
Wellcome Sanger Institute
Co-authored papers 3
Johns Hopkins School of Medicine
Co-authored papers 3
Institut fur Mathematik und Informatik, Universitat Greifswald
Co-authored papers 3
J. Craig Venter Institute
Co-authored papers 3
Yunnan Institute of Tropical Crops
Co-authored papers 3
The Institute for Genomic Research, 9712 Medical Center Drive
Co-authored papers 3
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Earlham Institute
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Johns Hopkins University
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Institute for Genome Sciences, University of Maryland School of Medicine
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