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Author Details

Masaaki Furuno
RIKEN Center for Integrative Medical Sciences
1989
40
22
PMIDPaper TitleJournal TitlePublished Year
36631751xcore: an R package for inference of gene expression regulators.BMC Bioinformatics2023
36631751xcore: an R package for inference of gene expression regulators.BMC Bioinformatics2023
33836165Development of p53 knockout U87MG cell line for unbiased drug delivery testing system using CRISPR-Cas9 and transcriptomic analysis.J Biotechnol2021
33784500Spliceostatin A interaction with SF3B limits U1 snRNP availability and causes premature cleavage and polyadenylation.Cell Chem Biol2021
33836165Development of p53 knockout U87MG cell line for unbiased drug delivery testing system using CRISPR-Cas9 and transcriptomic analysis.J Biotechnol2021
33784500Spliceostatin A interaction with SF3B limits U1 snRNP availability and causes premature cleavage and polyadenylation.Cell Chem Biol2021
30664627C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.Nat Commun2019
31772269A framework for identification of on- and off-target transcriptional responses to drug treatment.Sci Rep2019
30664627C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.Nat Commun2019
31772269A framework for identification of on- and off-target transcriptional responses to drug treatment.Sci Rep2019
29429943CD157 Marks Tissue-Resident Endothelial Stem Cells with Homeostatic and Regenerative Properties.Cell Stem Cell2018
29429943CD157 Marks Tissue-Resident Endothelial Stem Cells with Homeostatic and Regenerative Properties.Cell Stem Cell2018
27754875Global analysis of pre-mRNA subcellular localization following splicing inhibition by spliceostatin A.RNA2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28527858Repeated haemorrhages in peripheral nerve sheath tumours of the salivary glands after minor injury.Br J Oral Maxillofac Surg2017
27754875Global analysis of pre-mRNA subcellular localization following splicing inhibition by spliceostatin A.RNA2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28527858Repeated haemorrhages in peripheral nerve sheath tumours of the salivary glands after minor injury.Br J Oral Maxillofac Surg2017
27645772CCT2 Mutations Evoke Leber Congenital Amaurosis due to Chaperone Complex Instability.Sci Rep2016
27645772CCT2 Mutations Evoke Leber Congenital Amaurosis due to Chaperone Complex Instability.Sci Rep2016
25323024Novel nonsense and splice site mutations in CRB1 gene in two Japanese patients with early-onset retinal dystrophy.Doc Ophthalmol2015
25323024Novel nonsense and splice site mutations in CRB1 gene in two Japanese patients with early-onset retinal dystrophy.Doc Ophthalmol2015
25827439Reduced rod electroretinograms in carrier parents of two Japanese siblings with autosomal recessive retinitis pigmentosa associated with PDE6B gene mutations.Doc Ophthalmol2015
25678556Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.Science2015
25605338Congenital Achromatopsia and Macular Atrophy Caused by a Novel Recessive PDE6C Mutation (p.E591K).Ophthalmic Genet2015
25827439Reduced rod electroretinograms in carrier parents of two Japanese siblings with autosomal recessive retinitis pigmentosa associated with PDE6B gene mutations.Doc Ophthalmol2015
25678556Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.Science2015
25605338Congenital Achromatopsia and Macular Atrophy Caused by a Novel Recessive PDE6C Mutation (p.E591K).Ophthalmic Genet2015
24752437Longitudinal clinical course of three Japanese patients with Leber congenital amaurosis/early-onset retinal dystrophy with RDH12 mutation.Doc Ophthalmol2014
25485142RHO Mutations (p.W126L and p.A346P) in Two Japanese Families with Autosomal Dominant Retinitis Pigmentosa.J Ophthalmol2014
25268133Whole exome analysis identifies frequent CNGA1 mutations in Japanese population with autosomal recessive retinitis pigmentosa.PLoS One2014
24752437Longitudinal clinical course of three Japanese patients with Leber congenital amaurosis/early-onset retinal dystrophy with RDH12 mutation.Doc Ophthalmol2014
25485142RHO Mutations (p.W126L and p.A346P) in Two Japanese Families with Autosomal Dominant Retinitis Pigmentosa.J Ophthalmol2014
25268133Whole exome analysis identifies frequent CNGA1 mutations in Japanese population with autosomal recessive retinitis pigmentosa.PLoS One2014
24319333Whole-exome sequencing identifies a novel ALMS1 mutation (p.Q2051X) in two Japanese brothers with Alström syndrome.Mol Vis2013
24319333Whole-exome sequencing identifies a novel ALMS1 mutation (p.Q2051X) in two Japanese brothers with Alström syndrome.Mol Vis2013
21463453Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1.Genes Cells2011
21463453Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1.Genes Cells2011
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
16344565Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome.Genome Res2006
16683036Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs.PLoS Genet2006
16683026Clusters of internally primed transcripts reveal novel long noncoding RNAs.PLoS Genet2006
16344565Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome.Genome Res2006
17114936Discrimination of non-protein-coding transcripts from protein-coding mRNA.RNA Biol2006
17114936Discrimination of non-protein-coding transcripts from protein-coding mRNA.RNA Biol2006
16683036Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs.PLoS Genet2006
16683026Clusters of internally primed transcripts reveal novel long noncoding RNAs.PLoS Genet2006
16141072The transcriptional landscape of the mammalian genome.Science2005
16141072The transcriptional landscape of the mammalian genome.Science2005
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Collaborators

Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 19
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 15
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
Yasushi Okazaki
Intractable Disease Research Center, Graduate School of Medicine, Juntendo University
Co-authored papers 10
Kazuho Ikeo
Co-authored papers 10
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 9
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 9
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
Carol J Bult
The Jackson Laboratory Cancer Center
Co-authored papers 8
Shiro Fukuda
Graduate School of Medicine, Osaka University
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Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
John Quackenbush
Harvard T. H. Chan School of Public Health
Co-authored papers 7
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
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Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
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Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
David P Hill
Co-authored papers 6
Christine A Wells
The University of Melbourne
Co-authored papers 6
Hidemasa Bono
Hiroshima University
Co-authored papers 6
John S Mattick
Australia UNSW RNA Institute
Co-authored papers 5
Julian Gough
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 5
Hideo Matsuda
Osaka University
Co-authored papers 5
Timothy Ravasi
Okinawa Institute of Science and Technology Graduate University
Co-authored papers 5
Chikatoshi Kai
Co-authored papers 5
Martin C Frith
Artificial Intelligence Research Center, University of Tokyo
Co-authored papers 5
Tsugumi Kawashima
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Lynn M Schriml
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 4
Rohan D Teasdale
The University of Queensland
Co-authored papers 4
Kazuhiro Shibata
Co-authored papers 4
Noriko Ninomiya
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Co-authored papers 4
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