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Author Details

Chao Cheng
Baylor College of Medicine
2005
191
46
PMIDPaper TitleJournal TitlePublished Year
36394080Immune checkpoint gene VSIR predicts patient prognosis in acute myeloid leukemia and myelodysplastic syndromes.Cancer Med2023
36260656VISTA Targeting of T-cell Quiescence and Myeloid Suppression Overcomes Adaptive Resistance.Cancer Immunol Res2023
36394080Immune checkpoint gene VSIR predicts patient prognosis in acute myeloid leukemia and myelodysplastic syndromes.Cancer Med2023
37767002Focalizing regions of biomarker relevance facilitates biomarker prediction on histopathological images.iScience2023
37727789Combining single-cell sequencing and spatial transcriptome sequencing to identify exosome-related features of glioblastoma and constructing a prognostic model to identify BARD1 as a potential therapeutic target for GBM patients.Front Immunol2023
37568792Reduced Racial Disparity as a Result of Survival Improvement in Prostate Cancer.Cancers (Basel)2023
36522426Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP-1 shapes 3D enhancer landscapes.Nat Struct Mol Biol2023
37414528Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20.Life Sci Alliance2023
37218084The ratio of intratumour to stromal infiltrating lymphocytes better predicts prognosis in breast cancer.Clin Transl Med2023
36719382PD-L1 translocation to the plasma membrane enables tumor immune evasion through MIB2 ubiquitination.J Clin Invest2023
37284314A novel T-cell exhaustion-related feature can accurately predict the prognosis of OC patients.Front Pharmacol2023
37467716TimiGP: Inferring cell-cell interactions and prognostic associations in the tumor immune microenvironment through gene pairs.Cell Rep Med2023
36899395Prognostic landscape of mitochondrial genome in myelodysplastic syndrome after stem-cell transplantation.J Hematol Oncol2023
37146750Immune Infiltration in Tumor and Adjacent Non-Neoplastic Regions Codetermines Patient Clinical Outcomes in Early-Stage Lung Cancer.J Thorac Oncol2023
37081883Whole transcriptome analysis reveals that immune infiltration- lncRNAs are related to cellular apoptosis in liver transplantation.Front Immunol2023
37269429CircHIPK3 negatively regulates autophagy by blocking VCP binding to the Beclin 1 complex in bladder cancer.Discov Oncol2023
37268451Predicting benefit from immune checkpoint inhibitors in patients with non-small-cell lung cancer by CT-based ensemble deep learning: a retrospective study.Lancet Digit Health2023
36948020Pathway-driven rare germline variants associated with transplant-associated thrombotic microangiopathy (TA-TMA).Thromb Res2023
36805567Methylation of nonessential genes in cutaneous melanoma - Rule Out hypothesis.Melanoma Res2023
36692135Binding peptide generation for MHC Class I proteins with deep reinforcement learning.Bioinformatics2023
37370827Predicting Chemotherapy Benefit across Different Races in Early-Stage Breast Cancer Patients Using the Oncotype DX Score.Cancers (Basel)2023
36922995Random Forest model reveals the interaction between N6-methyladenosine modifications and RNA-binding proteins.iScience2023
37727789Combining single-cell sequencing and spatial transcriptome sequencing to identify exosome-related features of glioblastoma and constructing a prognostic model to identify BARD1 as a potential therapeutic target for GBM patients.Front Immunol2023
37568792Reduced Racial Disparity as a Result of Survival Improvement in Prostate Cancer.Cancers (Basel)2023
37767002Focalizing regions of biomarker relevance facilitates biomarker prediction on histopathological images.iScience2023
37218084The ratio of intratumour to stromal infiltrating lymphocytes better predicts prognosis in breast cancer.Clin Transl Med2023
36948020Pathway-driven rare germline variants associated with transplant-associated thrombotic microangiopathy (TA-TMA).Thromb Res2023
37081883Whole transcriptome analysis reveals that immune infiltration- lncRNAs are related to cellular apoptosis in liver transplantation.Front Immunol2023
37284314A novel T-cell exhaustion-related feature can accurately predict the prognosis of OC patients.Front Pharmacol2023
37414528Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20.Life Sci Alliance2023
37146750Immune Infiltration in Tumor and Adjacent Non-Neoplastic Regions Codetermines Patient Clinical Outcomes in Early-Stage Lung Cancer.J Thorac Oncol2023
37467716TimiGP: Inferring cell-cell interactions and prognostic associations in the tumor immune microenvironment through gene pairs.Cell Rep Med2023
37370827Predicting Chemotherapy Benefit across Different Races in Early-Stage Breast Cancer Patients Using the Oncotype DX Score.Cancers (Basel)2023
37269429CircHIPK3 negatively regulates autophagy by blocking VCP binding to the Beclin 1 complex in bladder cancer.Discov Oncol2023
37268451Predicting benefit from immune checkpoint inhibitors in patients with non-small-cell lung cancer by CT-based ensemble deep learning: a retrospective study.Lancet Digit Health2023
36522426Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP-1 shapes 3D enhancer landscapes.Nat Struct Mol Biol2023
36922995Random Forest model reveals the interaction between N6-methyladenosine modifications and RNA-binding proteins.iScience2023
36719382PD-L1 translocation to the plasma membrane enables tumor immune evasion through MIB2 ubiquitination.J Clin Invest2023
36692135Binding peptide generation for MHC Class I proteins with deep reinforcement learning.Bioinformatics2023
36805567Methylation of nonessential genes in cutaneous melanoma - Rule Out hypothesis.Melanoma Res2023
36899395Prognostic landscape of mitochondrial genome in myelodysplastic syndrome after stem-cell transplantation.J Hematol Oncol2023
36260656VISTA Targeting of T-cell Quiescence and Myeloid Suppression Overcomes Adaptive Resistance.Cancer Immunol Res2023
34815255Clonal Hematopoiesis Mutations in Patients with Lung Cancer Are Associated with Lung Cancer Risk Factors.Cancer Res2022
36230719Microglia-Based Gene Expression Signature Highly Associated with Prognosis in Low-Grade Glioma.Cancers (Basel)2022
35491423The steroid hormone estriol (E<sub>3</sub>) regulates epigenetic programming of fetal mouse brain and reproductive tract.BMC Biol2022
35999269A combination of intrinsic and extrinsic features improves prognostic prediction in malignant pleural mesothelioma.Br J Cancer2022
35421082Abnormal global alternative RNA splicing in COVID-19 patients.PLoS Genet2022
35419569Immune infiltration difference between tumor and adjacent normal regions is prognostic for gastric cancer patients.Clin Transl Discov2022
36331809LncRNA GAS5 regulates the Wnt/β-catenin pathway through the miR-18a-5p/AXIN2/GSK3β axis to inhibit the proliferation and migration of bladder cancer cells.Carcinogenesis2022
36536222A refined use of mutations to guide immunotherapy decisions.Nature2022
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Collaborators

Mark Gerstein
Yale University
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Matthew Ung
Norris Cotton Cancer Center, Geisel School of Medicine at Dartmouth
Co-authored papers 27
Christopher I Amos
Baylor College of Medicine
Co-authored papers 23
Joel Rozowsky
Co-authored papers 12
Koon-Kiu Yan
Co-authored papers 12
Kevin Y Yip
Co-authored papers 11
Michael Snyder
Stanford University
Co-authored papers 8
Daifeng Wang
University of Wisconsin-Madison
Co-authored papers 7
Jianjun Zhang
The University of Texas MD Anderson Cancer Center
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Jing Leng
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Michael L Whitfield
Geisel School of Medicine at Dartmouth
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Roger P Alexander
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Shaoke Lou
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LaDeana W Hillier
University of Washington
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Xiaotu Ma
St. Jude Children's Research Hospital
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Yafang Li
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Kevin P White
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Anshul Kundaje
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Peter J Bickel
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Rayjean J Hung
Lunenfeld-Tanenbaum Research Institute
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James B Brown
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Casey S Greene
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
Co-authored papers 3
Arif Harmanci
The University of Texas Health Science Center at Houston
Co-authored papers 3
Casey S Greene
Co-authored papers 3
John K Field
University of Liverpool, Molecular & Clinical Cancer Medicine
Co-authored papers 3
Philip Cayting
Co-authored papers 3
Elise A Feingold
Co-authored papers 3
Brock C Christensen
Geisel School of Medicine, Dartmouth College
Co-authored papers 3
Ronglai Shen
Co-authored papers 3
Xiangjun Xiao
Institute for Clinical and Translational Research, Baylor College of Medicine
Co-authored papers 3
Release 1.2