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Author Details

Yansheng Liu
Yale University School of Medicine
2008
91
33
PMIDPaper TitleJournal TitlePublished Year
38000392The SysteMHC Atlas v2.0, an updated resource for mass spectrometry-based immunopeptidomics.Nucleic Acids Res2024
36824919Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis.bioRxiv2023
37449645Acute penetrating injury of the spinal cord by a wooden spike with delayed surgery: a case report.Neural Regen Res2023
37410869Oncogene-like addiction to aneuploidy in human cancers.Science2023
37365174An optogenetic-phosphoproteomic study reveals dynamic Akt1 signaling profiles in endothelial cells.Nat Commun2023
371635887SK methylation by METTL3 promotes transcriptional activity.Sci Adv2023
36753634Targeted Dephosphorylation of Tau by Phosphorylation Targeting Chimeras (PhosTACs) as a Therapeutic Modality.J Am Chem Soc2023
36781298Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities.Clin Transl Med2023
36711754Reciprocal inhibition of PIN1 and APC/C<sub>CDH1</sub> controls timely G1/S transition and creates therapeutic vulnerability.Res Sq2023
36711674Oncogene-like addiction to aneuploidy in human cancers.bioRxiv2023
36799530Post-translational modification and phenotype.Proteomics2023
36422574Toward a hypothesis-free understanding of how phosphorylation dynamically impacts protein turnover.Proteomics2023
34878717A peptidoform based proteomic strategy for studying functions of post-translational modifications.Proteomics2022
35498955Association between prenatal or postpartum exposure to tobacco smoking and allergic rhinitis in the offspring: An updated meta-analysis of nine cohort studies.Tob Induc Dis2022
36432100Novel Ascorbic Acid Co-Crystal Formulations for Improved Stability.Molecules2022
36148042Evolution of higher mesenchymal CD44 expression in the human lineage: A gene linked to cancer malignancy.Evol Med Public Health2022
36352155Andrographolide elevates tumor necrosis factor-related apoptosis-inducing ligand lethality through reactive oxygen species accumulation and gasdermin E cleavage in breast cancer cells.Med Oncol2022
36083897Proteotype coevolution and quantitative diversity across 11 mammalian species.Sci Adv2022
33481703Cross-compartment signal propagation in the mitotic exit network.Elife2021
33533601BoxCarmax: A High-Selectivity Data-Independent Acquisition Mass Spectrometry Method for the Analysis of Protein Turnover and Complex Samples.Anal Chem2021
33728422Data-independent acquisition-based proteome and phosphoproteome profiling across six melanoma cell lines reveals determinants of proteotypes.Mol Omics2021
34550675Developing a Bimolecular Affinity Purification Strategy to Isolate 26S Proteasome Holocomplexes for Complex-Centric Proteomic Analysis.Anal Chem2021
34010649A PKD-MFF signaling axis couples mitochondrial fission to mitotic progression.Cell Rep2021
33229715Surgical intervention combined with weight-bearing walking training improves neurological recoveries in 320 patients with clinically complete spinal cord injury: a prospective self-controlled study.Neural Regen Res2021
33238149Global and Site-Specific Effect of Phosphorylation on Protein Turnover.Dev Cell2021
32479063Multi-in-One: Multiple-Proteases, One-Hour-Shot Strategy for Fast and High-Coverage Phosphoproteomic Investigation.Anal Chem2020
32027860A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS.Cell Syst2020
32068945Germ-free and microbiota-associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes.Cell Microbiol2020
33333029SECAT: Quantifying Protein Complex Dynamics across Cell States by Network-Centric Analysis of SEC-SWATH-MS Profiles.Cell Syst2020
32732981Strategies to enable large-scale proteomics for reproducible research.Nat Commun2020
32526036NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses.Nucleic Acids Res2020
32175694Isoform-resolved correlation analysis between mRNA abundance regulation and protein level degradation.Mol Syst Biol2020
30632221Inhibition of enhancer of zest homologue 2 is a potential therapeutic target for high-MYC medulloblastoma.Neuropathology2019
31730861Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.Cell2019
31585088Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.Cell2019
31608127Capillary zone electrophoresis-tandem mass spectrometry using ultraviolet photodissociation (213 nm) for large-scale top-down proteomics.Anal Methods2019
31607355The effects and potential mechanisms of locomotor training on improvements of functional recovery after spinal cord injury.Int Rev Neurobiol2019
31175306Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.Nat Commun2019
31315058Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry.Cell Rep2019
31622013motifeR: An Integrated Web Software for Identification and Visualization of Protein Posttranslational Modification Motifs.Proteomics2019
30778230Multi-omic measurements of heterogeneity in HeLa cells across laboratories.Nat Biotechnol2019
31147889Assessing the Relationship Between Mass Window Width and Retention Time Scheduling on Protein Coverage for Data-Independent Acquisition.J Am Soc Mass Spectrom2019
30901150Combining Rapid Data Independent Acquisition and CRISPR Gene Deletion for Studying Potential Protein Functions: A Case of HMGN1.Proteomics2019
29671580Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and α-1B-Glycoprotein.Anal Chem2018
29847809Similarities and Differences of Blood N-Glycoproteins in Five Solid Carcinomas at Localized Clinical Stage Analyzed by SWATH-MS.Cell Rep2018
29977602Systems pharmacology using mass spectrometry identifies critical response nodes in prostate cancer.NPJ Syst Biol Appl2018
27966270Comparison of targeted proteomics approaches for detecting and quantifying proteins derived from human cancer tissues.Proteomics2017
28100988Simultaneous analyses of N-linked and O-linked glycans of ovarian cancer cells using solid-phase chemoenzymatic method.Clin Proteomics2017
29089484Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells.Nat Commun2017
29016103Comparison of Enrichment Methods for Intact N- and O-Linked Glycopeptides Using Strong Anion Exchange and Hydrophilic Interaction Liquid Chromatography.Anal Chem2017
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Collaborators

Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 27
Ben C Collins
Queen's University of Belfast
Co-authored papers 11
Rong Zeng
Co-authored papers 8
Hui Zhang
Co-authored papers 7
Xiao-Ming Xu
Co-authored papers 5
Ludovic Gillet
ETH Zurich
Co-authored papers 4
Ashok R Venkitaraman
University of Cambridge, Hutchison Research Centre
Co-authored papers 4
Isabell Bludau
Max-Planck Institute of Biochemistry
Co-authored papers 4
Moritz Heusel
Lund University
Co-authored papers 4
Stefani N Thomas
Co-authored papers 4
Evan G Williams
University of Luxembourg
Co-authored papers 4
Ruth H??ttenhain
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 4
Lijun Chen
Co-authored papers 3
Peter J Wild
Co-authored papers 3
Tiannan Guo
Westlake University
Co-authored papers 3
Yingwei Hu
Co-authored papers 3
Shisheng Sun
Co-authored papers 3
Andreas Beyer
University of Cologne
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Wenguang Shao
Institute of Molecular Systems Biology, ETH Zurich
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Emmanouil T Dermitzakis
University of Geneva
Co-authored papers 2
Christie L Hunter
Co-authored papers 2
Li Ding
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 2
Liangliang Sun
Michigan State University
Co-authored papers 2
Weiping Ma
Co-authored papers 2
Andrea Califano
Columbia University
Co-authored papers 2
Tim D Spector
King's College London
Co-authored papers 2
Lukas Reiter
Co-authored papers 2
Martin Mehnert
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 2
Robert L Moritz
Institute for Systems Biology
Co-authored papers 2
Yize Li
Co-authored papers 2
Release 1.2