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Author Details

Hongyu Zhao
Yale University
1995
570
83
Wade Schulz (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35338489Clustering high-dimensional data via feature selection.Biometrics2023
38077048A Bayesian Approach to Correcting the Attenuation Bias of Regression Using Polygenic Risk Score.bioRxiv2023
37709241Genomic evidence of sex chromosome aneuploidy and infection-associated genotypes in the tsetse fly Glossina fuscipes, the major vector of African trypanosomiasis in Uganda.Infect Genet Evol2023
37523391A statistical framework to identify cell types whose genetically regulated proportions are associated with complex diseases.PLoS Genet2023
37563115Cell-type-specific co-expression inference from single cell RNA-sequencing data.Nat Commun2023
37461438An epigenetic clock for gestational age based on human umbilical vein endothelial cells from a diverse population of newborns.Res Sq2023
37292770Insights into human health from phenome- and genome-wide analyses of UK Biobank retinal optical coherence tomography phenotypes.medRxiv2023
37193511Conditional Functional Graphical Models.J Am Stat Assoc2023
36993588Genetic dysregulation of an endothelial Ras signaling network in vein of Galen malformations.bioRxiv2023
37085916Author Correction: mbDenoise: microbiome data denoising using zero-inflated probabilistic principal components analysis.Genome Biol2023
36949957<i>TP53-</i>mediated clonal hematopoiesis confers increased risk for incident atherosclerotic disease.Nat Cardiovasc Res2023
37387791Quantitative DNA Repair Biomarkers and Immune Profiling for Temozolomide and Olaparib in Metastatic Colorectal Cancer.Cancer Res Commun2023
37055164Early breast cancer risk detection: a novel framework leveraging polygenic risk scores and machine learning.J Med Genet2023
37344825Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progression.Respir Res2023
37284538Predicting Breast Cancer Risk for Women Veterans of African Ancestry in the Million Veteran Program.Health Equity2023
37147289Multi-trait genome-wide association analyses leveraging alcohol use disorder findings identify novel loci for smoking behaviors in the Million Veteran Program.Transl Psychiatry2023
37013615Estimation on risk of spontaneous abortions by genomic disorders from a meta-analysis of microarray results on large case series of pregnancy losses.Mol Genet Genomic Med2023
37207929eQTL studies: from bulk tissues to single cells.J Genet Genomics2023
36967791Polycystic ovary syndrome and 25-hydroxyvitamin D: A bidirectional two-sample Mendelian randomization study.Front Endocrinol (Lausanne)2023
37398263Tuning Parameters for Polygenic Risk Score Methods Using GWAS Summary Statistics from Training Data.Res Sq2023
36882394OTTERS: a powerful TWAS framework leveraging summary-level reference data.Nat Commun2023
36880644Live imaging reveals chromatin compaction transitions and dynamic transcriptional bursting during stem cell differentiation in vivo.Elife2023
36911699NLRP6 deficiency expands a novel CD103<sup>+</sup> B cell population that confers immune tolerance in NOD mice.Front Immunol2023
36460009SDPRX: A statistical method for cross-population prediction of complex traits.Am J Hum Genet2023
36762557Whole-Exome Sequencing Analyses Support a Role of Vitamin D Metabolism in Ischemic Stroke.Stroke2023
36702900Massively parallel knock-in engineering of human T cells.Nat Biotechnol2023
36631398A novel Bayesian framework for harmonizing information across tissues and studies to increase cell type deconvolution accuracy.Brief Bioinform2023
36414418Cell Cycle and Senescence Regulation by Podocyte Histone Deacetylase 1 and 2.J Am Soc Nephrol2023
36410685Outcomes Stratification of Head and Neck Cancer Using Pre- and Post-treatment DNA Methylation From Peripheral Blood.Int J Radiat Oncol Biol Phys2023
36928559A genome-wide association study of frailty identifies significant genetic correlation with neuropsychiatric, cardiovascular, and inflammation pathways.Geroscience2023
36222594MIF is a common genetic determinant of COVID-19 symptomatic infection and severity.QJM2023
36216496Integrative analyses for the identification of idiopathic pulmonary fibrosis-associated genes and shared loci with other diseases.Thorax2023
34718406MZINBVA: variational approximation for multilevel zero-inflated negative-binomial models for association analysis in microbiome surveys.Brief Bioinform2022
35653334A multi-population phenome-wide association study of genetically-predicted height in the Million Veteran Program.PLoS Genet2022
35771600ResPAN: a powerful batch correction model for scRNA-seq data through residual adversarial networks.Bioinformatics2022
35706040SCADIE: simultaneous estimation of cell type proportions and cell type-specific gene expressions using SCAD-based iterative estimating procedure.Genome Biol2022
35674826The immunology of Parkinson's disease.Semin Immunopathol2022
35640977VOC-alarm: mutation-based prediction of SARS-CoV-2 variants of concern.Bioinformatics2022
35666111Quantifying concordant genetic effects of de novo mutations on multiple disorders.Elife2022
35460704Whole-exome sequencing reveals damaging gene variants associated with hypoalphalipoproteinemia.J Lipid Res2022
35363784Non-linear archetypal analysis of single-cell RNA-seq data by deep autoencoders.PLoS Comput Biol2022
35787050Mendelian randomization for causal inference accounting for pleiotropy and sample structure using genome-wide summary statistics.Proc Natl Acad Sci U S A2022
35488087Incorporating local ancestry improves identification of ancestry-associated methylation signatures and meQTLs in African Americans.Commun Biol2022
35421325Leveraging LD eigenvalue regression to improve the estimation of SNP heritability and confounding inflation.Am J Hum Genet2022
35514182A Markov random field model-based approach for differentially expressed gene detection from single-cell RNA-seq data.Brief Bioinform2022
35619648Modified Banxia Xiexin Decoction Ameliorates Polycystic Ovarian Syndrome With Insulin Resistance by Regulating Intestinal Microbiota.Front Cell Infect Microbiol2022
35482673A Phenome-Wide Association Study of genes associated with COVID-19 severity reveals shared genetics with complex diseases in the Million Veteran Program.PLoS Genet2022
37089275Variance Estimation and Confidence Intervals from Genome-wide Association Studies Through High-dimensional Misspecified Mixed Model Analysis.J Stat Plan Inference2022
36583014Benchmarking automated cell type annotation tools for single-cell ATAC-seq data.Front Genet2022
36474154An unbiased kinship estimation method for genetic data analysis.BMC Bioinformatics2022
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Collaborators

Lindsay A Farrer
Boston University Chobanian & Avedisian School of Medicine
Co-authored papers 28
Richard P Lifton
The Rockefeller University
Co-authored papers 21
Shrikant Mane
Yale School of Medicine
Co-authored papers 21
Judy H Cho
Co-authored papers 16
Pradeep Natarajan
Co-authored papers 16
John Michael Gaziano
VA Boston Healthcare System
Co-authored papers 14
Clarence K Zhang
Co-authored papers 14
Amy C Justice
VA Connecticut Healthcare System
Co-authored papers 13
Kei-Hoi Cheung
Yale University School of Medicine
Co-authored papers 12
Seyedeh M Zekavat
Co-authored papers 12
Mark Gerstein
Yale University
Co-authored papers 8
Jianlei Gu
Yale University
Co-authored papers 8
Perry L Miller
Clinical Epidemiology Research Center (CERC), VA Connecticut Healthcare System
Co-authored papers 8
Scott M Damrauer
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 7
Hakon Hakonarson
The Center for Applied Genomics, Children's Hospital of Philadelphia
Co-authored papers 7
Kelly Cho
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Terence P Speed
Co-authored papers 7
Ryan Koesterer
Co-authored papers 7
William C Becker
VA Connecticut Healthcare System
Co-authored papers 7
Derek Klarin
Co-authored papers 7
Nicola Santoro
Co-authored papers 6
Irina R Tikhonova
School of Pharmacy, Queen's University Belfast
Co-authored papers 6
Michael Snyder
Stanford University
Co-authored papers 6
Tina M Cowan
Clinical Biochemical Genetics Laboratory
Co-authored papers 6
Sonia Caprio
Co-authored papers 6
Philip D Harvey
University of Miami Miller School of Medicine
Co-authored papers 5
Mark J Daly
Massachusetts General Hospital
Co-authored papers 5
Daniel J Rader
Co-authored papers 5
Nicholas G Martin
Co-authored papers 5
Grant D Huang
VA Boston Healthcare System
Co-authored papers 5
Release 1.2