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Author Details

Paul D Cotter
University College Cork, Ireland Teagasc Food Research Centre
1999
388
81
PMIDPaper TitleJournal TitlePublished Year
36287644Bioinformatic approaches for studying the microbiome of fermented food.Crit Rev Microbiol2023
37720155Maternal breastfeeding is associated with offspring microbiome diversity; a secondary analysis of the MicrobeMom randomized control trial.Front Microbiol2023
38082336Metagenomic comparison of the faecal and environmental resistome on Irish commercial pig farms with and without zinc oxide and antimicrobial usage.Anim Microbiome2023
37803789Use of reconstituted kefir consortia to determine the impact of microbial composition on kefir metabolite profiles.Food Res Int2023
37803768Sequencing-based analysis of the microbiomes of Spanish food processing facilities reveals environment-specific variation in the dominant taxa and antibiotic resistance genes.Food Res Int2023
37587110Comparison of the relative impacts of acute consumption of an inulin-enriched diet, milk kefir or a commercial probiotic product on the human gut microbiome and metabolome.NPJ Sci Food2023
37548066Can dietary proteins selectively reduce either the visceral or subcutaneous adipose tissues?Obes Rev2023
37841598Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways.iScience2023
37543003Selection of lactic acid bacteria as biopreservation agents and optimization of their mode of application for the control of Listeria monocytogenes in ready-to-eat cooked meat products.Int J Food Microbiol2023
37678679Exopolysaccharides produced by Bacillus spp. inhibit biofilm formation by Staphylococcus aureus strains associated with bovine mastitis.Int J Biol Macromol2023
37641353Associations between the postpartum uterine and vaginal microbiota and the subsequent development of purulent vaginal discharge vary with dairy cow breed and parity.J Dairy Sci2023
37193715Modulation of the gut microbiome with nisin.Sci Rep2023
37458296Towards sustainable Cleaning-in-Place (CIP) in dairy processing: Exploring enzyme-based approaches to cleaning in the Cheese industry.Compr Rev Food Sci Food Saf2023
37424323<i>Akkermansia muciniphila</i> reduces susceptibility to <i>Listeria monocytogenes</i> infection in mice fed a high-fat diet.Gut Microbes2023
37250040Fermented foods: a perspective on their role in delivering biotics.Front Microbiol2023
37151695Filamentous fungi in artisanal cheeses: A problem to be avoided or a market opportunity?Heliyon2023
37444219Shotgun Metagenomic Sequencing Revealed the Prebiotic Potential of a Fruit Juice Drink with Fermentable Fibres in Healthy Humans.Foods2023
37238082Differences in Faecal Microbiome Taxonomy, Diversity and Functional Potential in a Bovine Cohort Experimentally Challenged with <i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i> (MAP).Animals (Basel)2023
37367231Microbiome Interconnectedness throughout Environments with Major Consequences for Healthy People and a Healthy Planet.Microbiol Mol Biol Rev2023
37071010Amplicon-Based High-Throughput Sequencing Method for Genotypic Characterization of Norovirus in Oysters.Appl Environ Microbiol2023
37230981Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach.Nat Commun2023
37197820Mapping the available evidence on the impact of ingested live microbes on health: a scoping review protocol.BMJ Open2023
37224566Consumption of kefir made with traditional microorganisms resulted in greater improvements in LDL cholesterol and plasma markers of inflammation in males when compared to a commercial kefir: a randomized pilot study.Appl Physiol Nutr Metab2023
36889204Anti-virulence compounds against Staphylococcus aureus associated with bovine mastitis: A new therapeutic option?Microbiol Res2023
36725208Integrated molecular approaches for fermented food microbiome research.FEMS Microbiol Rev2023
36817100Seasonal variation in the Canastra cheese mycobiota.Front Microbiol2023
36695436Exploring the antibacterial potential of Lactococcus lactis subsp. lactis bv. diacetylactis BGBU1-4 by genome mining, bacteriocin gene overexpression, and chemical protein synthesis of lactolisterin BU variants.Lett Appl Microbiol2023
36541780Benchmarking Bioinformatic Tools for Amplicon-Based Sequencing of Norovirus.Appl Environ Microbiol2023
36768196Dietary-Induced Bacterial Metabolites Reduce Inflammation and Inflammation-Associated Cancer via Vitamin D Pathway.Int J Mol Sci2023
36636774The need for an integrated multi-OMICs approach in microbiome science in the food system.Compr Rev Food Sci Food Saf2023
36418894Investigation of the gut microbiome, bile acid composition and host immunoinflammatory response in a model of azoxymethane-induced colon cancer at discrete timepoints.Br J Cancer2023
36369718Human gut homeostasis and regeneration: the role of the gut microbiota and its metabolites.Crit Rev Microbiol2023
34591726Relevance of organ(s)-on-a-chip systems to the investigation of food-gut microbiota-host interactions.Crit Rev Microbiol2022
35740892Gut Steroids and Microbiota: Effect of Gonadectomy and Sex.Biomolecules2022
35719144Global Regulatory Frameworks for Fermented Foods: A Review.Front Nutr2022
35456752In Vitro and In Silico Based Approaches to Identify Potential Novel Bacteriocins from the Athlete Gut Microbiome of an Elite Athlete Cohort.Microorganisms2022
35688912Maximum depth sequencing reveals an ON/OFF replication slippage switch and apparent in vivo selection for bifidobacterial pilus expression.Sci Rep2022
37431045The Application of Metagenomics to Study Microbial Communities and Develop Desirable Traits in Fermented Foods.Foods2022
36396898The Athlete Gut Microbiome and its Relevance to Health and Performance: A Review.Sports Med2022
36466696Development of sequencing-based methodologies to distinguish viable from non-viable cells in a bovine milk matrix: A pilot study.Front Microbiol2022
36432779Arbuscular Mycorrhiza Support Plant Sulfur Supply through Organosulfur Mobilizing Bacteria in the Hypho- and Rhizosphere.Plants (Basel)2022
36504831Quorum sensing in human gut and food microbiomes: Significance and potential for therapeutic targeting.Front Microbiol2022
36504827Consumption of the cell-free or heat-treated fractions of a pitched kefir confers some but not all positive impacts of the corresponding whole kefir.Front Microbiol2022
36180931Microbiome ethics, guiding principles for microbiome research, use and knowledge management.Environ Microbiome2022
36144306Use of Probiotic Bacteria and Bacteriocins as an Alternative to Antibiotics in Aquaculture.Microorganisms2022
35903477Microbiome Research as an Effective Driver of Success Stories in Agrifood Systems - A Selection of Case Studies.Front Microbiol2022
36360712Recruiting and Engaging Women of Reproductive Age with Obesity: Insights from A Mixed-Methods Study within A Trial.Int J Environ Res Public Health2022
35889102<i>Lactobacillus salivarius</i> UCC118â¿¢ Dampens Inflammation and Promotes Microbiota Recovery to Provide Therapeutic Benefit in a DSS-Induced Colitis Model.Microorganisms2022
35950862Using Shotgun Sequencing to Describe the Changes Induced by In-Feed Zinc Oxide and Apramycin in the Microbiomes of Pigs One Week Postweaning.Microbiol Spectr2022
36160237Microorganisms present in artisanal fermented food from South America.Front Microbiol2022
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Collaborators

John F Cryan
University College Cork
Co-authored papers 26
Gerard Clarke
University College Cork
Co-authored papers 6
Helen M Roche
UCD Conway Institute, School of Public Health, University College Dublin
Co-authored papers 2
Nicola Segata
University of Trento
Co-authored papers 2
Curtis Huttenhower
Broad Institute of MIT and Harvard
Co-authored papers 2
Eran Elinav
German Cancer Research Center
Co-authored papers 2
Edoardo Pasolli
University of Naples Federico II
Co-authored papers 2
Rob Knight
University of California
Co-authored papers 2
Juan S Escobar
Health and Wellness Research Center
Co-authored papers 2
Gail Ackermann
University of California San Diego
Co-authored papers 1
Abraham A Palmer
McMaster University & St. Joseph's Healthcare Hamilton
Co-authored papers 1
Morgan G I Langille
Dalhousie University
Co-authored papers 1
Ekaterina Smirnova
Institut de Genetique et de Biologie Moleculaire et Cellulaire
Co-authored papers 1
John S Garavelli
Co-authored papers 1
Eran Segal
Weizmann Institute of Science
Co-authored papers 1
Jennifer M Fettweis
Virginia Commonwealth University
Co-authored papers 1
Weida Tong
National Center for Toxicological Research
Co-authored papers 1
Ryan T Demmer
University of Minnesota, Mailman School of Public Health Columbia University
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Peter J Turnbaugh
University of California san francisco
Co-authored papers 1
Wendell D Jones
Department of Bioinformatics and Clinical Systems
Co-authored papers 1
Pieter C Dorrestein
Co-authored papers 1
Arun H S Kumar
Sher-i-Kashmir Institute of Medical Sciences
Co-authored papers 1
Francine Z Marques
Monash University
Co-authored papers 1
Suzanne Devkota
David Geffen School of Medicine, University of California Los Angeles
Co-authored papers 1
Susan Bullman
Fred Hutchinson Cancer Center
Co-authored papers 1
Harry Sokol
Paris Center for Microbiome Medicine
Co-authored papers 1
Jon Clardy
Harvard Medical School, Blavatnik Institute
Co-authored papers 1
Mingyu Zhang
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 1
Ludwig Geistlinger
Center for Computational Biomedicine, Harvard Medical School
Co-authored papers 1
Anthony A Fodor
University of North Carolina at Charlotte
Co-authored papers 1
Release 1.2