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Author Details

Juan Antonio Vizca??no
EMBL-European Bioinformatics Institute (EMBL-EBI)
2000
149
44
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38038272WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows.J Proteome Res2024
38038272WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows.J Proteome Res2024
38015445EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023.Nucleic Acids Res2024
37992296Expression Atlas update: insights from sequencing data at both bulk and single cell level.Nucleic Acids Res2024
37787899TopDownApp: An open and modular platform for analysis and visualisation of top-down proteomics data.Proteomics2024
38015445EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023.Nucleic Acids Res2024
37992296Expression Atlas update: insights from sequencing data at both bulk and single cell level.Nucleic Acids Res2024
37787899TopDownApp: An open and modular platform for analysis and visualisation of top-down proteomics data.Proteomics2024
36370099The ProteomeXchange consortium at 10 years: 2023 update.Nucleic Acids Res2023
36370099The ProteomeXchange consortium at 10 years: 2023 update.Nucleic Acids Res2023
36074795Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future.Proteomics2023
38014076A meta-analysis of rice phosphoproteomics data to understand variation in cell signalling across the rice pan-genome.bioRxiv2023
37645494Foresight in clinical proteomics: current status, ethical considerations, and future perspectives.Open Res Eur2023
37875519lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation.Nat Commun2023
36577097Integrated View of Baseline Protein Expression in Human Tissues.J Proteome Res2023
36693629ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics.J Proteome Res2023
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
36477213EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022.Nucleic Acids Res2023
36744821Toward an Integrated Machine Learning Model of a Proteomics Experiment.J Proteome Res2023
38014076A meta-analysis of rice phosphoproteomics data to understand variation in cell signalling across the rice pan-genome.bioRxiv2023
37645494Foresight in clinical proteomics: current status, ethical considerations, and future perspectives.Open Res Eur2023
37875519lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation.Nat Commun2023
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
36477213EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022.Nucleic Acids Res2023
36693629ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics.J Proteome Res2023
36744821Toward an Integrated Machine Learning Model of a Proteomics Experiment.J Proteome Res2023
36577097Integrated View of Baseline Protein Expression in Human Tissues.J Proteome Res2023
36074795Is DIA proteomics data FAIR? Current data sharing practices, available bioinformatics infrastructure and recommendations for the future.Proteomics2023
34723319The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.Nucleic Acids Res2022
35714157Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues.PLoS Comput Biol2022
35701420Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas.Sci Data2022
35640880Method for Independent Estimation of the False Localization Rate for Phosphoproteomics.J Proteome Res2022
36523653Identifying individuals using proteomics: are we there yet?Front Mol Biosci2022
34850121Expression Atlas update: gene and protein expression in multiple species.Nucleic Acids Res2022
34723319The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.Nucleic Acids Res2022
35701420Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas.Sci Data2022
35640880Method for Independent Estimation of the False Localization Rate for Phosphoproteomics.J Proteome Res2022
35714157Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues.PLoS Comput Biol2022
36523653Identifying individuals using proteomics: are we there yet?Front Mol Biosci2022
34850121Expression Atlas update: gene and protein expression in multiple species.Nucleic Acids Res2022
34183830Universal Spectrum Identifier for mass spectra.Nat Methods2021
33893311An integrated landscape of protein expression in human cancer.Sci Data2021
33625229BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers.J Proteome Res2021
34183830Universal Spectrum Identifier for mass spectra.Nat Methods2021
33711481Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future.Mol Cell Proteomics2021
34615866A proteomics sample metadata representation for multiomics integration and big data analysis.Nat Commun2021
34599180The growing need for controlled data access models in clinical proteomics and metabolomics.Nat Commun2021
33625229BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers.J Proteome Res2021
33711481Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future.Mol Cell Proteomics2021
33893311An integrated landscape of protein expression in human cancer.Sci Data2021
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Collaborators

Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 54
Yasset Perez-Riverol
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 43
Eric W Deutsch
Institute for Systems Biology
Co-authored papers 32
Lennart Martens
Co-authored papers 25
Andrew R Jones
Institute of Systems, University of Liverpool
Co-authored papers 25
Rui Wang
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 19
Pierre-Alain Binz
Co-authored papers 15
Tobias Ternent
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 14
Sandra Orchard
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 12
Nuno Bandeira
University of California
Co-authored papers 12
Oliver Kohlbacher
Max Planck Institute for Developmental Biology
Co-authored papers 10
Julian Uszkoreit
Ruhr University Bochum
Co-authored papers 10
Irene Papatheodorou
Co-authored papers 10
Noemi Del-Toro
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 9
Alvis Brazma
European Bioinformatics Institute
Co-authored papers 9
Nancy George
Co-authored papers 8
Juan Pablo Albar
National Center for Biotechnology
Co-authored papers 8
Albert J R Heck
Utrecht University
Co-authored papers 7
Timo Sachsenberg
Institute for Bioinformatics and Medical Informatics, University of Tubingen
Co-authored papers 7
David L Tabb
Co-authored papers 6
Reza M Salek
Co-authored papers 6
Rolf Apweiler
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 6
Robert J Chalkley
Department of Pharmaceutical Chemistry, University of California at San Francisco
Co-authored papers 6
Fernando J Corrales
National Center for Biotechnology
Co-authored papers 5
Wout Bittremieux
University of Antwerp
Co-authored papers 5
Veit Schw??mmle
University of Southern Denmark
Co-authored papers 5
Laurent Gatto
de Duve Institute, Universite catholique de Louvain
Co-authored papers 5
Silvie Fexova
Co-authored papers 5
Maria J Martin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
Steffen Neumann
Leibniz Institute for Plant Biochemistry
Co-authored papers 4
Release 1.2