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Author Details

Victor Olman
University of Georgia
1994
49
20
PMIDPaper TitleJournal TitlePublished Year
25422082Comprehensive characterization of the genomic alterations in human gastric cancer.Int J Cancer2015
24467758Functional understanding of the diverse exon-intron structures of human GPCR genes.J Bioinform Comput Biol2014
23457606Barcode server: a visualization-based genome analysis system.PLoS One2013
22235300Genomic arrangement of regulons in bacterial genomes.PLoS One2012
22523396Hypoxia and miscoupling between reduced energy efficiency and signaling to cell proliferation drive cancer to grow increasingly faster.J Mol Cell Biol2012
20965966An integrated transcriptomic and computational analysis for biomarker identification in gastric cancer.Nucleic Acids Res2011
21528067Computational prediction and experimental validation of novel markers for detection of STEC O157:H7.World J Gastroenterol2011
21481772Optimal mutation sites for PRE data collection and membrane protein structure prediction.Structure2011
19941858Prediction of pathogenicity islands in enterohemorrhagic Escherichia coli O157:H7 using genomic barcodes.FEBS Lett2010
21060876A comparative analysis of gene-expression data of multiple cancer types.PLoS One2010
20459751Computational prediction of the osmoregulation network in Synechococcus sp. WH8102.BMC Genomics2010
20308592Genomic arrangement of bacterial operons is constrained by biological pathways encoded in the genome.Proc Natl Acad Sci U S A2010
18988623DOOR: a database for prokaryotic operons.Nucleic Acids Res2009
20172492Large-scale analyses of glycosylation in cellulases.Genomics Proteomics Bioinformatics2009
19407357Parallel clustering algorithm for large data sets with applications in bioinformatics.IEEE/ACM Trans Comput Biol Bioinform2009
18440870On application of directons to functional classification of genes in prokaryotes.Comput Biol Chem2008
19091119Barcodes for genomes and applications.BMC Bioinformatics2008
18574864Improving the performance of protein threading using insertion/deletion frequency arrays.J Bioinform Comput Biol2008
18218090Insertion Sequences show diverse recent activities in Cyanobacteria and Archaea.BMC Genomics2008
18271070RNACluster: An integrated tool for RNA secondary structure comparison and clustering.J Comput Chem2008
17170009Operon prediction using both genome-specific and general genomic information.Nucleic Acids Res2007
17951836Improvement in protein sequence-structure alignment using insertion/deletion frequency arrays.Comput Syst Bioinformatics Conf2007
17559671Computational prediction of Pho regulons in cyanobacteria.BMC Genomics2007
17787058Prediction of cis-regulatory elements: from high-information content analysis to motif identification.J Bioinform Comput Biol2007
17353185Hierarchical classification of functionally equivalent genes in prokaryotes.Nucleic Acids Res2007
16373500Mapping of orthologous genes in the context of biological pathways: An application of integer programming.Proc Natl Acad Sci U S A2006
17503397A generalized threading model using integer programming that allows for secondary structure element deletion.Genome Inform2006
17099938Gene expression data analysis in subtypes of ovarian cancer using covariance analysis.J Bioinform Comput Biol2006
17094250A point-process model for rapid identification of post-translational modifications.Pac Symp Biocomput2006
16473855Computational inference and experimental validation of the nitrogen assimilation regulatory network in cyanobacterium Synechococcus sp. WH 8102.Nucleic Acids Res2006
15454408A graph-theoretic approach for the separation of b and y ions in tandem mass spectra.Bioinformatics2005
16901107Prediction of functional modules based on gene distributions in microbial genomes.Genome Inform2005
16447964Accurate prediction of orthologous gene groups in microbes.Proc IEEE Comput Syst Bioinform Conf2005
16157864Comparative genomics analysis of NtcA regulons in cyanobacteria: regulation of nitrogen assimilation and its coupling to photosynthesis.Nucleic Acids Res2005
15901854Prediction of functional modules based on comparative genome analysis and Gene Ontology application.Nucleic Acids Res2005
15048978A computational method for assessing peptide- identification reliability in tandem mass spectrometry analysis with SEQUEST.Proteomics2004
16448029Mapping of microbial pathways through constrained mapping of orthologous genes.Proc IEEE Comput Syst Bioinform Conf2004
16448017Separation of ion types in tandem mass spectrometry data interpretation -- a graph-theoretic approach.Proc IEEE Comput Syst Bioinform Conf2004
14744980Protein structure prediction using sparse dipolar coupling data.Nucleic Acids Res2004
14992525Protein fold recognition through application of residual dipolar coupling data.Pac Symp Biocomput2004
12603039Identification of regulatory binding sites using minimum spanning trees.Pac Symp Biocomput2003
15706515Computational inference of regulatory pathways in microbes: an application to phosphorus assimilation pathways in Synechococcus sp. WH8102.Genome Inform2003
15290780CUBIC: identification of regulatory binding sites through data clustering.J Bioinform Comput Biol2003
14500821EXCAVATOR: a computer program for efficiently mining gene expression data.Nucleic Acids Res2003
12016051Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees.Bioinformatics2002
12626091Carbon sequestration in Synechococcus Sp.: from molecular machines to hierarchical modeling.OMICS2002
11791221Minimum spanning trees for gene expression data clustering.Genome Inform2001
9697184An editing environment for DNA sequence analysis and annotation (extended abstract).Pac Symp Biocomput1998
7821085Modeling the 3-D RNA distribution in the Balbiani ring granule.Chromosoma1994
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Collaborators

Ying Xu
The China-Japan Union Hospital, Jilin University
Co-authored papers 39
Dong Xu
University of Missouri
Co-authored papers 7
Ying Xu
Oak Ridge National Laboratory
Co-authored papers 6
Jun-Tao Guo
University of North Carolina at Charlotte
Co-authored papers 5
Kyle Ellrott
Oregon Health & Science University
Co-authored papers 3
Ian T Paulsen
Macquarie University
Co-authored papers 2
Rhona K Stuart
Co-authored papers 1
Manesh Shah
University of Tennessee Knoxville
Co-authored papers 1
Li Wang
Co-authored papers 1
David T Jones
University College London
Co-authored papers 1
Philip F LoCascio
University of Oxford
Co-authored papers 1
Hanchuan Peng
Institute for Brain and Intelligence, Southeast University
Co-authored papers 1
Tao Jiang
University of California riverside
Co-authored papers 1
I Jonathan Amster
University of Georgia
Co-authored papers 1
Ron Orlando
Co-authored papers 1
Release 1.2