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Author Details

Doheon Lee
Korea Advanced Institute of Science and Technology
2004
132
26
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36579854Large-scale prediction of adverse drug reactions-related proteins with network embedding.Bioinformatics2023
37738675Interpretation of SNP combination effects on schizophrenia etiology based on stepwise deep learning with multi-precision data.Brief Funct Genomics2023
37253056Identifying prognostic subgroups of luminal-A breast cancer using deep autoencoders and gene expressions.PLoS Comput Biol2023
37028141Reverse tracking from drug-induced transcriptomes through multilayer molecular networks reveals hidden drug targets.Comput Biol Med2023
35895695Combining empirical knowledge, in silico molecular docking and ADMET profiling to identify therapeutic phytochemicals from Brucea antidysentrica for acute myeloid leukemia.PLoS One2022
35651625Computational Discovery of Cancer Immunotherapy Targets by Intercellular CRISPR Screens.Front Immunol2022
35345312Predicting Ischemic Stroke in Patients with Atrial Fibrillation Using Machine Learning.Front Biosci (Landmark Ed)2022
35618736Plant phenotype relationship corpus for biomedical relationships between plants and phenotypes.Sci Data2022
36448483Highly Adsorptive Au-TiO<sub>2</sub> Nanocomposites for the SERS Face Mask Allow the Machine-Learning-Based Quantitative Assay of SARS-CoV-2 in Artificial Breath Aerosols.ACS Appl Mater Interfaces2022
36564437In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models.Sci Rep2022
33477921EGR1/GADD45α Activation by ROS of Non-Thermal Plasma Mediates Cell Death in Thyroid Carcinoma.Cancers (Basel)2021
34674631Context-aware multi-token concept recognition of biological entities.BMC Bioinformatics2021
32340247A Systems Biological Approach to Understanding the Mechanisms Underlying the Therapeutic Potential of Red Ginseng Supplements against Metabolic Diseases.Molecules2020
33519445A Deep Learning-Based Approach for Identifying the Medicinal Uses of Plant-Derived Natural Compounds.Front Pharmacol2020
35025443Mechanical Optimization of Diatomite Monoliths from Freeze Casting for High-Throughput Applications.ACS Appl Bio Mater2020
33106154Literature mining for context-specific molecular relations using multimodal representations (COMMODAR).BMC Bioinformatics2020
32946464An interactive retrieval system for clinical trial studies with context-dependent protocol elements.PLoS One2020
32917913Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals.Sci Rep2020
30621047Synergistic Effects of Sanghuang⁻Danshen Bioactives on Arterial Stiffness in a Randomized Clinical Trial of Healthy Smokers: An Integrative Approach to in silico Network Analysis.Nutrients2019
30184045Deconvoluting essential gene signatures for cancer growth from genomic expression in compound-treated cells.Bioinformatics2019
30224231Shared co-expression networks in frontal cortex of the normal aged brain and schizophrenia.Schizophr Res2019
31412866ETM-DB: integrated Ethiopian traditional herbal medicine and phytochemicals database.BMC Complement Altern Med2019
31510697PRISM: methylation pattern-based, reference-free inference of subclonal makeup.Bioinformatics2019
31278329Synergistic mechanisms of Sanghuang-Danshen phytochemicals on postprandial vascular dysfunction in healthy subjects: A network biology approach based on a clinical trial.Sci Rep2019
31009761Concept embedding to measure semantic relatedness for biomedical information ontologies.J Biomed Inform2019
30940832Meta-path Based Prioritization of Functional Drug Actions with Multi-Level Biological Networks.Sci Rep2019
31138123CODA-ML: context-specific biological knowledge representation for systemic physiology analysis.BMC Bioinformatics2019
30605476Transcription of human endogenous retroviruses in human brain by RNA-seq analysis.PLoS One2019
26930688Predicting the Absorption Potential of Chemical Compounds Through a Deep Learning Approach.IEEE/ACM Trans Comput Biol Bioinform2018
30076354Phenotype-oriented network analysis for discovering pharmacological effects of natural compounds.Sci Rep2018
30096807Discovering Health Benefits of Phytochemicals with Integrated Analysis of the Molecular Network, Chemical Properties and Ethnopharmacological Evidence.Nutrients2018
30140017Topological motifs populate complex networks through grouped attachment.Sci Rep2018
29897322A systematic approach to identify therapeutic effects of natural products based on human metabolite information.BMC Bioinformatics2018
29897320Identification of common coexpression modules based on quantitative network comparison.BMC Bioinformatics2018
30364555Deep learning-based classification with improved time resolution for physical activities of children.PeerJ2018
29671402Annotating activation/inhibition relationships to protein-protein interactions using gene ontology relations.BMC Syst Biol2018
29511315Publisher Correction: CODA: Integrating multi-level context-oriented directed associations for analysis of drug effects.Sci Rep2018
29371651In silico profiling of systemic effects of drugs to predict unexpected interactions.Sci Rep2018
29506508Petri net-based prediction of therapeutic targets that recover abnormally phosphorylated proteins in muscle atrophy.BMC Syst Biol2018
29343846Author Correction: CODA: Integrating multi-level context-oriented directed associations for analysis of drug effects.Sci Rep2018
28073001Normalization of Tumor Vessels by Tie2 Activation and Ang2 Inhibition Enhances Drug Delivery and Produces a Favorable Tumor Microenvironment.Cancer Cell2017
29192270HIDEEP: a systems approach to predict hormone impacts on drug efficacy based on effect paths.Sci Rep2017
28617223Coupling effects on turning points of infectious diseases epidemics in scale-free networks.BMC Bioinformatics2017
28790372CODA: Integrating multi-level context-oriented directed associations for analysis of drug effects.Sci Rep2017
26077692Differential activation of immune/inflammatory response-related co-expression modules in the hippocampus across the major psychiatric disorders.Mol Psychiatry2016
26626077Predicting unintended effects of drugs based on off-target tissue effects.Biochem Biophys Res Commun2016
27898074Transcriptome sequencing of the choroid plexus in schizophrenia.Transl Psychiatry2016
27960088Normalization of Tumor Vessels by Tie2 Activation and Ang2 Inhibition Enhances Drug Delivery and Produces a Favorable Tumor Microenvironment.Cancer Cell2016
27650402A corpus for plant-chemical relationships in the biomedical domain.BMC Bioinformatics2016
27490208Prediction of compound-target interactions of natural products using large-scale drug and protein information.BMC Bioinformatics2016
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Collaborators

Eunjung Lee
Boston Children's Hospital
Co-authored papers 10
Sunjae Lee
Gwangju Institute of Science and Technology
Co-authored papers 9
Maree J Webster
Co-authored papers 7
Kiyoung Lee
Samsung Advanced Institute of Technology (SAIT), Samsung Electronics Co. Ltd.
Co-authored papers 7
Woochang Hwang
College of Medicine, Hanyang University
Co-authored papers 7
Min Song
Yonsei University
Co-authored papers 6
Jong-Won Kim
Samsung Medical Center, Sungkyunkwan University School of Medicine
Co-authored papers 6
Hyojung Paik
University of Science and Technology (UST)
Co-authored papers 5
Dongsup Kim
Korea Advanced Institute of Science and Technology
Co-authored papers 3
Hyunchul Jung
Wellcome Sanger Institute
Co-authored papers 3
Hyunju Lee
Gwangju Institute of Science and Technology
Co-authored papers 2
Han-Yu Chuang
Departments of Bioinformatics and Clinical Genomics, Illumina Inc.
Co-authored papers 2
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 2
Hong-Hee Won
Co-authored papers 2
Predrag Radivojac
Indiana University
Co-authored papers 2
Jens Nielsen
Chalmers University of Technology
Co-authored papers 2
Jong-Il Kim
Genomic Medicine Institute, Medical Research Center, Seoul National University
Co-authored papers 2
Yu-Tsueng Liu
University of California San Diego
Co-authored papers 1
John W Cole
Co-authored papers 1
Phil H Lee
Center for Genomic Medicine, Massachusetts General Hospital
Co-authored papers 1
Nicholas J Talley
University of Newcastle
Co-authored papers 1
Gholamreza Bidkhori
KTH - Royal Institute of Technology, Sweden AIVIVO Ltd. Unit 25
Co-authored papers 1
Cheng Zhang
KTH-Royal Institute of Technology
Co-authored papers 1
Edward S Boyden
McGovern Institute for Brain Research
Co-authored papers 1
Robert H Yolken
Co-authored papers 1
Won Do Heo
Co-authored papers 1
Hyosil Kim
Severance Biomedical Science Institute, Yonsei University College of Medicine
Co-authored papers 1
Tu Minh Phuong
Posts & Telecommunications Institute of Technology
Co-authored papers 1
Adil Mardinoglu
Royal Institute of Technology Science for Life Laboratory Stockholm Sweden.
Co-authored papers 1
Release 1.2