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Author Details

Yoichi Takenaka
Kansai University
2002
22
8
PMIDPaper TitleJournal TitlePublished Year
29994156Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm.IEEE/ACM Trans Comput Biol Bioinform2019
29994156Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm.IEEE/ACM Trans Comput Biol Bioinform2019
29105599Genotype-Based Epigenetic Differences in Monozygotic Twins Discordant for Positive Antithyroglobulin Autoantibodies.Thyroid2018
29745848Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells.BMC Bioinformatics2018
29460198Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus⿿ÿ⿿yedoensis 'Somei-yoshino' across the Japanese archipelago.J Plant Res2018
29105599Genotype-Based Epigenetic Differences in Monozygotic Twins Discordant for Positive Antithyroglobulin Autoantibodies.Thyroid2018
29745848Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells.BMC Bioinformatics2018
29460198Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus⿿ÿ⿿yedoensis 'Somei-yoshino' across the Japanese archipelago.J Plant Res2018
29234806Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer.JAMA2017
29234806Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer.JAMA2017
26508425Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution.J Bioinform Comput Biol2015
26508425Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution.J Bioinform Comput Biol2015
25210663Metagenome fragment classification based on multiple motif-occurrence profiles.PeerJ2014
25210663Metagenome fragment classification based on multiple motif-occurrence profiles.PeerJ2014
23266644An estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles.Gene2013
23266644An estimation method for a cellular-state-specific gene regulatory network along tree-structured gene expression profiles.Gene2013
22369509An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems.BMC Genomics2012
22369509An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems.BMC Genomics2012
22144255Inference of S-system models of gene regulatory networks using immune algorithm.J Bioinform Comput Biol2011
22369457Perfect Hamming code with a hash table for faster genome mapping.BMC Genomics2011
22144255Inference of S-system models of gene regulatory networks using immune algorithm.J Bioinform Comput Biol2011
22369457Perfect Hamming code with a hash table for faster genome mapping.BMC Genomics2011
20012501Gene expression profile prospectively predicts peritoneal relapse after curative surgery of gastric cancer.Ann Surg Oncol2010
20012501Gene expression profile prospectively predicts peritoneal relapse after curative surgery of gastric cancer.Ann Surg Oncol2010
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
20180269A method for efficient execution of bioinformatics workflows.Genome Inform2009
20180269A method for efficient execution of bioinformatics workflows.Genome Inform2009
17968606Tissue-specific functions based on information content of gene ontology using cap analysis gene expression.Med Biol Eng Comput2007
17968606Tissue-specific functions based on information content of gene ontology using cap analysis gene expression.Med Biol Eng Comput2007
18546513GO based tissue specific functions of mouse using countable gene expression profiles.Genome Inform2007
18546513GO based tissue specific functions of mouse using countable gene expression profiles.Genome Inform2007
16683027A method for similarity search of genomic positional expression using CAGE.PLoS Genet2006
16683036Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs.PLoS Genet2006
16683027A method for similarity search of genomic positional expression using CAGE.PLoS Genet2006
16683036Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs.PLoS Genet2006
16141072The transcriptional landscape of the mammalian genome.Science2005
16141072The transcriptional landscape of the mammalian genome.Science2005
14734316Graph-based clustering for finding distant relationships in a large set of protein sequences.Bioinformatics2004
15706501A method for clustering gene expression data based on graph structure.Genome Inform2004
14734316Graph-based clustering for finding distant relationships in a large set of protein sequences.Bioinformatics2004
15706501A method for clustering gene expression data based on graph structure.Genome Inform2004
12466851Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.Nature2002
12466851Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.Nature2002
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Collaborators

Hideo Matsuda
Osaka University
Co-authored papers 19
Shigeto Seno
Osaka University
Co-authored papers 14
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 5
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Rohan D Teasdale
The University of Queensland
Co-authored papers 4
Julian Gough
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 4
Timothy Ravasi
Okinawa Institute of Science and Technology Graduate University
Co-authored papers 4
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 4
Chikatoshi Kai
Co-authored papers 4
Christine A Wells
The University of Melbourne
Co-authored papers 4
John Quackenbush
Harvard T. H. Chan School of Public Health
Co-authored papers 4
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 4
Masaaki Furuno
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Martin S Taylor
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 3
Kazunori Waki
Co-authored papers 3
Carol J Bult
The Jackson Laboratory Cancer Center
Co-authored papers 3
Albin Sandelin
University of Copenhagen
Co-authored papers 3
Yasuhiro Tomaru
Co-authored papers 3
Takashi Gojobori
Co-authored papers 3
Tsugumi Kawashima
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Yasushi Okazaki
Intractable Disease Research Center, Graduate School of Medicine, Juntendo University
Co-authored papers 3
Sean M Grimmond
The University of Melbourne
Co-authored papers 3
Colin F Fletcher
Co-authored papers 3
Claes Wahlestedt
Co-authored papers 3
Kazuhiro Shibata
Co-authored papers 3
Colin A Semple
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 3
Release 1.2