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Author Details

Thomas C Terwilliger
Los Alamos National Laboratory
1980
205
63
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38036854AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination.Nat Methods2024
36876433Accelerating crystal structure determination with iterative AlphaFold prediction.Acta Crystallogr D Struct Biol2023
37431759Overall protein structure quality assessment using hydrogen-bonding parameters.Acta Crystallogr D Struct Biol2023
37428905Crystal structures of multidrug efflux transporters from <i>Burkholderia pseudomallei</i> suggest details of transport mechanism.Proc Natl Acad Sci U S A2023
36920336Likelihood-based docking of models into cryo-EM maps.Acta Crystallogr D Struct Biol2023
36920335Likelihood-based signal and noise analysis for docking of models into cryo-EM maps.Acta Crystallogr D Struct Biol2023
36395154Label-free affinity screening, design and synthesis of inhibitors targeting the Mycobacterium tuberculosis L-alanine dehydrogenase.PLoS One2022
35835745A monomeric mycobacteriophage immunity repressor utilizes two domains to recognize an asymmetric DNA sequence.Nat Commun2022
36266465Improved AlphaFold modeling with implicit experimental information.Nat Methods2022
36322415Putting AlphaFold models to work with phenix.process_predicted_model and ISOLDE.Acta Crystallogr D Struct Biol2022
34531533Engineering an efficient and bright split Corynactis californica green fluorescent protein.Sci Rep2021
33825706Protein identification from electron cryomicroscopy maps by automated model building and side-chain matching.Acta Crystallogr D Struct Biol2021
33542514Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.Nat Methods2021
31599033Cryo-EM map interpretation and protein model-building using iterative map segmentation.Protein Sci2020
33214667Publisher Correction: A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis.Sci Rep2020
32807957Improvement of cryo-EM maps by density modification.Nat Methods2020
33021493Density modification of cryo-EM maps.Acta Crystallogr D Struct Biol2020
31588918Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.Acta Crystallogr D Struct Biol2019
30387776BpeB, a major resistance-nodulation-cell division transporter from Burkholderia cenocepacia: construct design, crystallization and preliminary structural analysis.Acta Crystallogr F Struct Biol Commun2018
30063987Map segmentation, automated model-building and their application to the Cryo-EM Model Challenge.J Struct Biol2018
30198894New tools for the analysis and validation of cryo-EM maps and atomic models.Acta Crystallogr D Struct Biol2018
29872005Automated map sharpening by maximization of detail and connectivity.Acta Crystallogr D Struct Biol2018
29872004Real-space refinement in PHENIX for cryo-EM and crystallography.Acta Crystallogr D Struct Biol2018
30377346A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps.Nat Methods2018
28692281Structural and Biophysical Characterization of the Mycobacterium tuberculosis Protein Rv0577, a Protein Associated with Neutral Red Staining of Virulent Tuberculosis Strains and Homologue of the Streptomyces coelicolor Protein KbpA.Biochemistry2017
28250944Raw diffraction data preservation and reuse: overview, update on practicalities and metadata requirements.IUCrJ2017
28375150Responses to `Atomic resolution': a badly abused term in structural biology.Acta Crystallogr D Struct Biol2017
28177311Polder maps: improving OMIT maps by excluding bulk solvent.Acta Crystallogr D Struct Biol2017
28970579A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis.Sci Rep2017
26227049RNA Structure Refinement Using the ERRASER-Phenix Pipeline.Methods Mol Biol2016
26960123Can I solve my structure by SAD phasing? Planning an experiment, scaling data and evaluating the useful anomalous correlation and anomalous signal.Acta Crystallogr D Struct Biol2016
26960122Can I solve my structure by SAD phasing? Anomalous signal in SAD phasing.Acta Crystallogr D Struct Biol2016
26960117Efficient merging of data from multiple samples for determination of anomalous substructure.Acta Crystallogr D Struct Biol2016
27050687Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.Structure2016
25532136Macromolecular X-ray structure determination using weak, single-wavelength anomalous data.Nat Methods2015
26278175A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.Structure2015
26249347Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles.Acta Crystallogr D Biol Crystallogr2015
26226459X-ray structure determination using low-resolution electron microscopy maps for molecular replacement.Nat Protoc2015
25983389Protein Crystallography from the Perspective of Technology Developments.Crystallogr Rev2015
25760612FEM: feature-enhanced map.Acta Crystallogr D Biol Crystallogr2015
24419386Ligand placement based on prior structures: the guided ligand-replacement method.Acta Crystallogr D Biol Crystallogr2014
25453071Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering.Proc Natl Acad Sci U S A2014
25551456Subfamily-specific adaptations in the structures of two penicillin-binding proteins from Mycobacterium tuberculosis.PLoS One2014
25286844Metrics for comparison of crystallographic maps.Acta Crystallogr D Biol Crystallogr2014
25286839Continuous mutual improvement of macromolecular structure models in the PDB and of X-ray crystallographic software: the dual role of deposited experimental data.Acta Crystallogr D Biol Crystallogr2014
25286835Archiving raw crystallographic data.Acta Crystallogr D Biol Crystallogr2014
25103409Structural biology. Crystal structure of the CRISPR RNA-guided surveillance complex from Escherichia coli.Science2014
246997301.55 ÿ resolution X-ray crystal structure of Rv3902c from Mycobacterium tuberculosis.Acta Crystallogr F Struct Biol Commun2014
24699654Automated identification of elemental ions in macromolecular crystal structures.Acta Crystallogr D Biol Crystallogr2014
24419387Automating crystallographic structure solution and refinement of protein-ligand complexes.Acta Crystallogr D Biol Crystallogr2014
  • 1 - 50 of 205

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Collaborators

Paul D Adams
Lawrence Berkeley National Laboratory
Co-authored papers 50
Randy J Read
Cambridge Institute for Medical Research, University of Cambridge
Co-authored papers 35
Li-Wei Hung
Los Alamos National Laboratory
Co-authored papers 34
Geoffrey S Waldo
Los Alamos National Laboratory
Co-authored papers 28
Chang-Yub Kim
Los Alamos National Laboratory
Co-authored papers 27
David Eisenberg
university of california los angeles
Co-authored papers 13
Warren S Sandberg
Vanderbilt University Medical Center
Co-authored papers 8
Billy K Poon
Lawrence Berkeley National Laboratory
Co-authored papers 8
Frank DiMaio
University of Washington
Co-authored papers 5
Tom Alber
University of California berkeley
Co-authored papers 5
Peter J Myler
University of Guelph
Co-authored papers 4
Thomas R Ioerger
Co-authored papers 4
David Baker
University of Washington
Co-authored papers 4
James M Holton
Lawrence Berkeley National Laboratory
Co-authored papers 3
James S Fraser
University of California san francisco
Co-authored papers 3
Shigeyuki Yokoyama
Shinshu University School of Medicine
Co-authored papers 3
Gunnar F Schr??der
Institute of Biological Information Processing (Structural Biochemistry)
Co-authored papers 2
Wah Chiu
Stanford University
Co-authored papers 2
David I Stuart
University of Oxford
Co-authored papers 2
Michael E Wall
Co-authored papers 2
Helen M Berman
The State University of New Jersey
Co-authored papers 2
Rhiju Das
Stanford University School of Medicine
Co-authored papers 2
Andrzej Joachimiak
Center for Structural Biology of Infectious Diseases, University of Chicago
Co-authored papers 2
Debanu Das
Accelero Biostructures Inc., USA XPose Therapeutics Inc.
Co-authored papers 2
Matthew L Baker
McGovern Medical School at the University of Texas Health Science Center
Co-authored papers 2
Gaetano T Montelione
Rensselaer Polytechnic Institute
Co-authored papers 2
Joel L Sussman
Weizmann Institute of Science
Co-authored papers 2
Stephen K Burley
The State University of New Jersey
Co-authored papers 2
Michael A Kennedy
Miami University
Co-authored papers 2
Rong Xiao
School of Public Health, Capital Medical University
Co-authored papers 1
Release 1.2