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Author Details

Mark R Segal
University of California san francisco
1981
167
52
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34494087Assessing chromatin relocalization in 3D using the patient rule induction method.Biostatistics2023
37014015Proteomic cardiovascular risk assessment in chronic kidney disease.Eur Heart J2023
36829114Does multi-way, long-range chromatin contact data advance 3D genome reconstruction?BMC Bioinformatics2023
36705086Analytical and Biological Variability of a Commercial Modified Aptamer Assay in Plasma Samples of Patients with Chronic Kidney Disease.J Appl Lab Med2023
33221831Principal curve approaches for inferring 3D chromatin architecture.Biostatistics2022
35571676Can 3D diploid genome reconstruction from unphased Hi-C data be salvaged?NAR Genom Bioinform2022
34486503Increased rates of secondary bacterial infections, including <i>Enterococcus</i> bacteremia, in patients hospitalized with coronavirus disease 2019 (COVID-19).Infect Control Hosp Epidemiol2022
33262071Correlates and Consequences of High Serum Irisin Concentration in Patients on Hemodialysis: A Longitudinal Analysis.J Ren Nutr2021
34343025Indoor Air Pollution and Susceptibility to Tuberculosis Infection in Urban Vietnamese Children.Am J Respir Crit Care Med2021
33301538Composition and origin of lung fluid proteome in premature infants and relationship to respiratory outcome.PLoS One2020
31886859Predialysis fluid overload and gait speed: a repeated measures analysis among patients on chronic dialysis.Nephrol Dial Transplant2020
32093610Assessing stationary distributions derived from chromatin contact maps.BMC Bioinformatics2020
31043625The Rabl configuration limits topological entanglement of chromosomes in budding yeast.Sci Rep2019
30192916Frailty Among Patients Receiving Hemodialysis: Evolution of Components and Associations With Mortality.J Gerontol A Biol Sci Med Sci2019
30140069Surfactant status and respiratory outcome in premature infants receiving late surfactant treatment.Pediatr Res2019
30085235Low testosterone is associated with frailty, muscle wasting and physical dysfunction among men receiving hemodialysis: a longitudinal analysis.Nephrol Dial Transplant2019
30870065Epigenomic profiling of newborns with isolated orofacial clefts reveals widespread DNA methylation changes and implicates metastable epiallele regions in disease risk.Epigenetics2019
29263212Memory T Cell Proliferation before Hepatitis C Virus Therapy Predicts Antiviral Immune Responses and Treatment Success.J Immunol2018
29848293Improved accuracy assessment for 3D genome reconstructions.BMC Bioinformatics2018
29361496Associations of lipoproteins with cardiovascular and infection-related outcomes in patients receiving hemodialysis.J Clin Lipidol2018
29787561Interplay of strain and race/ethnicity in the innate immune response to M. tuberculosis.PLoS One2018
28974520Improving Assessment of Drug Safety Through Proteomics: Early Detection and Mechanistic Characterization of the Unforeseen Harmful Effects of Torcetrapib.Circulation2018
27447987Immune Response and Mortality Risk Relate to Distinct Lung Microbiomes in Patients with HIV and Pneumonia.Am J Respir Crit Care Med2017
28963088Traffic-Related Air Pollution and All-Cause Mortality during Tuberculosis Treatment in California.Environ Health Perspect2017
29100778Biomarkers of Tuberculosis Severity and Treatment Effect: A Directed Screen of 70 Host Markers in a Randomized Clinical Trial.EBioMedicine2017
28576906Factors Associated with Frailty and Its Trajectory among Patients on Hemodialysis.Clin J Am Soc Nephrol2017
26869583Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions.Nucleic Acids Res2016
26257296Identification of Discrete Prognostic Groups in Ewing Sarcoma.Pediatr Blood Cancer2016
27655116HIV Infection Is Associated with Shortened Telomere Length in Ugandans with Suspected Tuberculosis.PLoS One2016
27327800Development and Validation of a Protein-Based Risk Score for Cardiovascular Outcomes Among Patients With Stable Coronary Heart Disease.JAMA2016
27281349Antiinflammatory Effects of Budesonide in Human Fetal Lung.Am J Respir Cell Mol Biol2016
26715752Chromosome position determines the success of double-strand break repair.Proc Natl Acad Sci U S A2016
26022314Serum biomarkers of treatment response within a randomized clinical trial for pulmonary tuberculosis.Tuberculosis (Edinb)2015
26347874Current theoretical models fail to predict the topological complexity of the human genome.Front Mol Biosci2015
26553003Reconstruction of 3D genome architecture via a two-stage algorithm.BMC Bioinformatics2015
24325966Monocyte activation by interferon α is associated with failure to achieve a sustained virologic response after treatment for hepatitis C virus infection.J Infect Dis2014
25407917Distance-based assessment of the localization of functional annotations in 3D genome reconstructions.BMC Genomics2014
25077610Development of a database for translational spinal cord injury research.J Neurotrauma2014
24752365The lung microbiome of Ugandan HIV-infected pneumonia patients is compositionally and functionally distinct from that of San Franciscan patients.PLoS One2014
24777168Common variants on 9p21.3 are associated with brain arteriovenous malformations with accompanying arterial aneurysms.J Neurol Neurosurg Psychiatry2014
24519450Reproducibility of 3D chromatin configuration reconstructions.Biostatistics2014
23544088Derivation of multivariate syndromic outcome metrics for consistent testing across multiple models of cervical spinal cord injury in rats.PLoS One2013
23966409Global RNA structure analysis of poliovirus identifies a conserved RNA structure involved in viral replication and infectivity.J Virol2013
23628816Analytical validation of a practical molecular assay prognostic of survival in nonsquamous non-small cell lung cancer.Diagn Mol Pathol2013
2374885613C NMR metabolomic evaluation of immediate and delayed mild hypothermia in cerebrocortical slices after oxygen-glucose deprivation.Anesthesiology2013
237086891H nuclear magnetic resonance brain metabolomics in neonatal mice after hypoxia-ischemia distinguished normothermic recovery from mild hypothermia recoveries.Pediatr Res2013
21793187Evaluation of polymorphisms in EWSR1 and risk of Ewing sarcoma: a report from the Childhood Cancer Survivor Study.Pediatr Blood Cancer2012
23050139Evaluation of Norepinephrine Transporter Expression and Metaiodobenzylguanidine Avidity in Neuroblastoma: A Report from the Children's Oncology Group.Int J Mol Imaging2012
23153121A histone arginine methylation localizes to nucleosomes in satellite II and III DNA sequences in the human genome.BMC Genomics2012
22763861Being 'underpowered' does not make a study unethical.Stat Med2012
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Collaborators

Scott T Weiss
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 17
Frank E Speizer
Harvard University, Harvard Medical School
Co-authored papers 12
Peter Bacchetti
University of California San Francisco
Co-authored papers 7
Mark J S Kelly
Department of Pharmaceutical Chemistry, University of California San Francisco
Co-authored papers 5
George T O'Connor
Boston University School of Medicine
Co-authored papers 5
Jean Yee Hwa Yang
The University of Sydney
Co-authored papers 5
Susan V Lynch
University of California san francisco
Co-authored papers 3
Fred Lurmann
Inc. Petaluma
Co-authored papers 3
David M Jablons
University of California, USA Cardiovascular Research Institute san francisco
Co-authored papers 3
Steven G DuBois
Co-authored papers 3
Homer A Boushey
University of California san francisco
Co-authored papers 3
Frederick M Hecht
Co-authored papers 3
Cindy A Hunt
University of California san francisco
Co-authored papers 3
David M Lewinsohn
Oregon Health and Science University
Co-authored papers 2
Susan Woskie
Co-authored papers 2
Michael S Beattie
3Weill Institute for Neurosciences, University of California san francisco
Co-authored papers 2
John C Gensel
Co-authored papers 2
Jessica L Nielson
Co-authored papers 2
Adam R Ferguson
University of California san francisco
Co-authored papers 2
Susan Redline
Brigham and Women's Hospital
Co-authored papers 2
Tor D Tosteson
Norris Cotton Cancer Center, Dartmouth-Hitchcock Medical Center
Co-authored papers 2
Michael W Weiner
University of California San Francisco
Co-authored papers 2
Soonmee Cha
Co-authored papers 2
Bernard Rosner
Brigham and Women's Hospital and Harvard Medical School
Co-authored papers 2
Diane R Gold
Co-authored papers 2
Jacqueline C Bresnahan
3Weill Institute for Neurosciences, University of California san francisco
Co-authored papers 2
Josef Coresh
Co-authored papers 2
Michael P Busch
Vitalant Research Institute
Co-authored papers 2
Stephen K Van Den Eeden
Kaiser Permanente Northern California, University of California san francisco
Co-authored papers 2
Michael W McDermott
University of California san francisco
Co-authored papers 2
Release 1.2