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Author Details

Florian Mueller
Institut Pasteur, Universite de Paris
1995
67
37
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36280749HT-smFISH: a cost-effective and flexible workflow for high-throughput single-molecule RNA imaging.Nat Protoc2023
37117166An interactive murine single-cell atlas of the lung responses to radiation injury.Nat Commun2023
36749641A specific molecular signature in SARS-CoV-2-infected kidney biopsies.JCI Insight2023
34996842Sensitive visualization of SARS-CoV-2 RNA with CoronaFISH.Life Sci Alliance2022
35347070FISH-quant v2: a scalable and modular tool for smFISH image analysis.RNA2022
34921763piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development.Dev Cell2022
33270250Clustering and reverse transcription of HIV-1 genomes in nuclear niches of macrophages.EMBO J2021
33649340A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport.Nat Commun2021
33664268Germline inherited small RNAs facilitate the clearance of untranslated maternal mRNAs in C. elegans embryos.Nat Commun2021
33833036Spatial transcriptomics for respiratory research and medicine.Eur Respir J2021
34301927Stochastic pausing at latent HIV-1 promoters generates transcriptional bursting.Nat Commun2021
34373603Live single-cell transcriptional dynamics via RNA labelling during the phosphate response in plants.Nat Plants2021
32541012mRNA localization is linked to translation regulation in the Caenorhabditis elegans germ lineage.Development2020
33214549Functional compensation precedes recovery of tissue mass following acute liver injury.Nat Commun2020
32783880A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting.Dev Cell2020
32238582Remodeling of the Core Leads HIV-1 Preintegration Complex into the Nucleus of Human Lymphocytes.J Virol2020
30846691The molecular logic of Nanog-induced self-renewal in mouse embryonic stem cells.Nat Commun2019
31780825ImJoy: an open-source computational platform for the deep learning era.Nat Methods2019
30988355Co-translational assembly of mammalian nuclear multisubunit complexes.Nat Commun2019
29643234Visualization of Arenavirus RNA Species in Individual Cells by Single-Molecule Fluorescence <i>In Situ</i> Hybridization Suggests a Model of Cyclical Infection and Clearance during Persistence.J Virol2018
30075145A Growing Toolbox to Image Gene Expression in Single Cells: Sensitive Approaches for Demanding Challenges.Mol Cell2018
30389932A computational framework to study sub-cellular RNA localization.Nat Commun2018
27056330Divergent Binding and Transactivation by Two Related Steroid Receptors at the Same Response Element.J Biol Chem2016
27723719Mitotic binding of Esrrb marks key regulatory regions of the pluripotency network.Nat Cell Biol2016
27599845smiFISH and FISH-quant - a flexible single RNA detection approach with super-resolution capability.Nucleic Acids Res2016
27597760Visualization of single endogenous polysomes reveals the dynamics of translation in live human cells.J Cell Biol2016
27566148Single molecule tracking of Ace1p in Saccharomyces cerevisiae defines a characteristic residence time for non-specific interactions of transcription factors with chromatin.Nucleic Acids Res2016
27461529A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting.Nat Commun2016
24255166Stable assembly of HIV-1 export complexes occurs cotranscriptionally.RNA2014
24981864Transcription factors modulate c-Fos transcriptional bursts.Cell Rep2014
25133404Distinctly different dynamics and kinetics of two steroid receptors at the same response elements in living cells.PLoS One2014
24489764Spiegelzymes® mirror-image hammerhead ribozymes and mirror-image DNAzymes, an alternative to siRNAs and microRNAs to cleave mRNAs in vivo?PLoS One2014
24460908PRC1 components exhibit different binding kinetics in Polycomb bodies.Biol Cell2014
23223154Fast multicolor 3D imaging using aberration-corrected multifocus microscopy.Nat Methods2013
23900248Convergence of chromatin binding estimates in live cells.Nat Methods2013
24025032Quantifying transcription factor kinetics: at work or at play?Crit Rev Biochem Mol Biol2013
23801734Defective cerebellar control of cortical plasticity in writer's cramp.Brain2013
23764940Genome-wide measurement of protein-DNA binding dynamics using competition ChIP.Nat Protoc2013
23538861FISH-quant: automatic counting of transcripts in 3D FISH images.Nat Methods2013
22183594Monitoring dynamic binding of chromatin proteins in vivo by fluorescence recovery after photobleaching.Methods Mol Biol2012
22500766Minimizing the impact of photoswitching of fluorescent proteins on FRAP analysis.Biophys J2012
22498630Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function.Nature2012
22546423Disseminated peritoneal leiomyomatosis with endometriosis.J Minim Invasive Gynecol2012
21733617Laparoscopic treatment of a tailgut cyst.Eur J Obstet Gynecol Reprod Biol2011
20413286FRAP and kinetic modeling in the analysis of nuclear protein dynamics: what do we really know?Curr Opin Cell Biol2010
21076419Three-dimensional cellular ultrastructure resolved by X-ray microscopy.Nat Methods2010
21044608Cross-validating FRAP and FCS to quantify the impact of photobleaching on in vivo binding estimates.Biophys J2010
20224551Dissecting the binding mechanism of the linker histone in live cells: an integrated FRAP analysis.EMBO J2010
20309570The laparoscopic-assisted vaginal approach to early endometrial cancer.Arch Gynecol Obstet2010
18199661Evidence for a common mode of transcription factor interaction with chromatin as revealed by improved quantitative fluorescence recovery after photobleaching.Biophys J2008
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Collaborators

James G McNally
Institute for Soft Matter and Functional Materials
Co-authored papers 13
Christophe Zimmer
Institut Pasteur, Universite Paris Cite, France Institut Pasteur
Co-authored papers 12
Thomas Walter
PSL University
Co-authored papers 8
Wei Ouyang
KTH Royal Institute of Technology
Co-authored papers 3
Gordon L Hager
National Cancer Institute, National Institutes of Health
Co-authored papers 2
Charles-Henri Lecellier
Institut de Genetique Moleculaire de Montpellier, University of Montpellier, CNRS
Co-authored papers 2
Colin R Lickwar
Duke University School of Medicine
Co-authored papers 2
Francesca Di Nunzio
Institut Pasteur, Universite Paris Cite
Co-authored papers 2
Jason D Lieb
The University of Chicago
Co-authored papers 2
Alex K Shalek
Institute for Medical Engineering & Science, Massachusetts Institute of Technology
Co-authored papers 1
Orestis Faklaris
Co-authored papers 1
J. B Heymann
Frederick National Laboratory for Cancer Research, Inc.
Co-authored papers 1
Sean E Hanlon
Drew University, National Institutes of Health, Rutgers University New Brunswick, University of North Carolina at Chapel Hill
Co-authored papers 1
David A Agard
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 1
Svetlana Dokudovskaya
CNRS UMR9018, Institut Gustave Roussy, Universite Paris-Saclay
Co-authored papers 1
Kunio Nagashima
Co-authored papers 1
David T Auble
University of Virginia
Co-authored papers 1
Daniel Zenklusen
Universite de Montreal
Co-authored papers 1
Blandine Monel
Institut Pasteur, CNRS UMR 3569
Co-authored papers 1
Matthieu Jamme
INSERM U8, Universite Paris Saclay
Co-authored papers 1
Martin Hjelmare
KTH-Royal Institute of Technology
Co-authored papers 1
Sophie Leboucher
Institut Curie, Universite PSL, CNRS UMR8
Co-authored papers 1
Ina Poser
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 1
Ardan Patwardhan
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Anthony A Hyman
Max Planck Institute of Molecular Cell Biology and Genetics
Co-authored papers 1
Emma Lundberg (CM4AI)
Stanford University
Co-authored papers 1
Olivier Schwartz
Institut Pasteur, Universite Paris Cite, CNRS UMR9
Co-authored papers 1
Release 1.2