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Author Details

Zhongge Zhang
University of California at San Diego
2003
44
22
PMIDPaper TitleJournal TitlePublished Year
36737588Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves.Nat Microbiol2023
37147430E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding.Sci Rep2023
35163427Insertion Sequence (IS) Element-Mediated Activating Mutations of the Cryptic Aromatic β-Glucoside Utilization (<i>BglGFB</i>) Operon Are Promoted by the Anti-Terminator Protein (BglG) in <i>Escherichia coli</i>.Int J Mol Sci2022
35508583A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli.Sci Rep2022
35544692Cellular perception of growth rate and the mechanistic origin of bacterial growth law.Proc Natl Acad Sci U S A2022
36480614Principles of gene regulation quantitatively connect DNA to RNA and proteins in bacteria.Science2022
36420159Histone-like nucleoid structuring (H-NS) protein silences the beta-glucoside (<i>bgl</i>) utilization operon in <i>Escherichia coli</i> by forming a DNA loop.Comput Struct Biotechnol J2022
36142257Effects of Global and Specific DNA-Binding Proteins on Transcriptional Regulation of the <i>E. coli bgl</i> Operon.Int J Mol Sci2022
36067284Coordination of gene expression with cell size enables <i>Escherichia coli</i> to efficiently maintain motility across conditions.Proc Natl Acad Sci U S A2022
34032011From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions.Mol Syst Biol2021
32998150Protein-Protein Interactions in the Cytoplasmic Membrane of Escherichia coli: Influence of the Overexpression of Diverse Transporter-Encoding Genes on the Activities of PTS Sugar Uptake Systems.Microb Physiol2020
31509826A Riboflavin Transporter in Bdellovibrio exovorous JSS.J Mol Microbiol Biotechnol2019
31751341Protein:Protein interactions in the cytoplasmic membrane apparently influencing sugar transport and phosphorylation activities of the e. coli phosphotransferase system.PLoS One2019
29176613Global landscape of cell envelope protein complexes in Escherichia coli.Nat Biotechnol2018
28634232The phosphocarrier protein HPr of the bacterial phosphotransferase system globally regulates energy metabolism by directly interacting with multiple enzymes in <i>Escherichia coli</i>.J Biol Chem2017
28199212Transposon-mediated directed mutation in bacteria and eukaryotes.Front Biosci (Landmark Ed)2017
28100305Environment-directed activation of the Escherichia coliflhDC operon by transposons.Microbiology (Reading)2017
28666002Hopping into a hot seat: Role of DNA structural features on IS5-mediated gene activation and inactivation under stress.PLoS One2017
27681630Effect of flow and peristaltic mixing on bacterial growth in a gut-like channel.Proc Natl Acad Sci U S A2016
27810619Transposon-mediated activation of the Escherichia coli glpFK operon is inhibited by specific DNA-binding proteins: Implications for stress-induced transposition events.Mutat Res2016
25957275Expression and Characterization of a Novel Thermo-Alkalistable Lipase from Hyperthermophilic Bacterium Thermotoga maritima.Appl Biochem Biotechnol2015
26632588Overflow metabolism in Escherichia coli results from efficient proteome allocation.Nature2015
26159081Control of Transposon-Mediated Directed Mutation by the Escherichia coli Phosphoenolpyruvate:Sugar Phosphotransferase System.J Mol Microbiol Biotechnol2015
24923415Regulation of crp gene expression by the catabolite repressor/activator, Cra, in Escherichia coli.J Mol Microbiol Biotechnol2014
25136335Transposon-mediated directed mutation controlled by DNA binding proteins in Escherichia coli.Front Microbiol2014
23925119Coordination of bacterial proteome with metabolism by cyclic AMP signalling.Nature2013
24288338The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria.Science2013
22767600Genetic engineering of the phosphocarrier protein NPr of the Escherichia coli phosphotransferase system selectively improves sugar uptake activity.J Biol Chem2012
23010999Need-based activation of ammonium uptake in Escherichia coli.Mol Syst Biol2012
21742981Quantifying the sequence-function relation in gene silencing by bacterial small RNAs.Proc Natl Acad Sci U S A2011
22248543Transposon-mediated adaptive and directed mutations and their potential evolutionary benefits.J Mol Microbiol Biotechnol2011
20097855Precise excision of IS5 from the intergenic region between the fucPIK and the fucAO operons and mutational control of fucPIK operon expression in Escherichia coli.J Bacteriol2010
21097934Interdependence of cell growth and gene expression: origins and consequences.Science2010
19834539A novel mechanism of transposon-mediated gene activation.PLoS Genet2009
20064380Growth rate-dependent global effects on gene expression in bacteria.Cell2009
19682247A mechanism of transposon-mediated directed mutation.Mol Microbiol2009
17417881Functional characterization of the heterooligomeric EbrAB multidrug efflux transporter of Bacillus subtilis.Biochemistry2007
17713988Quantitative characteristics of gene regulation by small RNA.PLoS Biol2007
17376875Combinatorial transcriptional control of the lactose operon of Escherichia coli.Proc Natl Acad Sci U S A2007
15659676Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli.J Bacteriol2005
15661733Lysophospholipid flipping across the Escherichia coli inner membrane catalyzed by a transporter (LplT) belonging to the major facilitator superfamily.J Biol Chem2005
15150239Transcriptome analysis of Crp-dependent catabolite control of gene expression in Escherichia coli.J Bacteriol2004
12819857A transporter of Escherichia coli specific for L- and D-methionine is the prototype for a new family within the ABC superfamily.Arch Microbiol2003
12644495The ascorbate transporter of Escherichia coli.J Bacteriol2003
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Collaborators

Milton H Saier
University of California at San Diego
Co-authored papers 29
Irina A Rodionova
University of California at San Diego
Co-authored papers 5
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 3
Mohan Babu
University of Regina
Co-authored papers 3
Peter Uetz
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 3
Dmitry A Rodionov
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 2
Sunyoung Kim
University of Regina
Co-authored papers 2
Jitender Mehla
University of Oklahoma
Co-authored papers 2
Bernhard O Palsson
University of California San Diego
Co-authored papers 2
Andrew Emili
Boston University School of Medicine, Boston University
Co-authored papers 2
Norman Goodacre
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 2
Zoran Minic
University of Ottawa
Co-authored papers 1
Ashkan Golshani
Ottawa Institute of Systems Biology, Carleton University
Co-authored papers 1
Olga Kagan
Molloy University, NY The City University of New York School of Professional Studies
Co-authored papers 1
James Vlasblom
University of Regina
Co-authored papers 1
Seesandra V Rajagopala
Vanderbilt University Medical Center
Co-authored papers 1
Megha Shah
University of Toronto, University Avenue
Co-authored papers 1
Erik Holtzapple
University of Saskatchewan
Co-authored papers 1
Alla Gagarinova
University of Regina
Co-authored papers 1
Cedoljub Bundalovic-Torma
University of Toronto
Co-authored papers 1
Hongbo Guo
Beihang University
Co-authored papers 1
Viktor Deineko
University of Northern British Columbia
Co-authored papers 1
??ke V??stermark
Uppsala University
Co-authored papers 1
John Parkinson
The Hospital for Sick Children
Co-authored papers 1
Daniel Burnside
Ottawa Institute of Systems Biology, University of Ottawa, Carleton University
Co-authored papers 1
Yogee Pandya
University of Toronto
Co-authored papers 1
Mohsen Hooshyar
Department of Biology and Ottawa Institute of Systems Biology, Carleton University
Co-authored papers 1
Stefan Wuchty
University of Miami
Co-authored papers 1
Jack F Greenblatt
College Street, University of Toronto
Co-authored papers 1
Geoffrey Chang
Skaggs School of Pharmacy and Pharmaceutical Sciences.
Co-authored papers 1
Release 1.2