Author details

Full Name

Michael Reich

Affiliation

university of california san diego

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37398372	NMFClustering: Accessible NMF-based clustering utilizing GPU acceleration.	bioRxiv	2023
38014215	Deciphering the Functional Roles of Individual Cancer Alleles Across Comprehensive Cancer Genomic Studies.	bioRxiv	2023
37398372	NMFClustering: Accessible NMF-based clustering utilizing GPU acceleration.	bioRxiv	2023
38014215	Deciphering the Functional Roles of Individual Cancer Alleles Across Comprehensive Cancer Genomic Studies.	bioRxiv	2023
36040167	Tangent normalization for somatic copy-number inference in cancer genome analysis.	Bioinformatics	2022
36040167	Tangent normalization for somatic copy-number inference in cancer genome analysis.	Bioinformatics	2022
34095869	A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells.	STAR Protoc	2021
34095869	A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells.	STAR Protoc	2021
30559381	Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.	Nature	2019
30559381	Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.	Nature	2019
28822753	The GenePattern Notebook Environment.	Cell Syst	2017
28822753	The GenePattern Notebook Environment.	Cell Syst	2017
26780094	Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.	Nat Methods	2016
26780094	Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.	Nat Methods	2016
23822732	GenePattern flow cytometry suite.	Source Code Biol Med	2013
23822732	GenePattern flow cytometry suite.	Source Code Biol Med	2013
22460905	The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.	Nature	2012
22539670	RNA-SeQC: RNA-seq metrics for quality control and process optimization.	Bioinformatics	2012
22460905	The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.	Nature	2012
22539670	RNA-SeQC: RNA-seq metrics for quality control and process optimization.	Bioinformatics	2012
20164920	The landscape of somatic copy-number alteration across human cancers.	Nature	2010
20164920	The landscape of somatic copy-number alteration across human cancers.	Nature	2010
18551415	Using GenePattern for gene expression analysis.	Curr Protoc Bioinformatics	2008
18923165	Gene expression in fixed tissues and outcome in hepatocellular carcinoma.	N Engl J Med	2008
18551415	Using GenePattern for gene expression analysis.	Curr Protoc Bioinformatics	2008
18923165	Gene expression in fixed tissues and outcome in hepatocellular carcinoma.	N Engl J Med	2008
16642009	GenePattern 2.0.	Nat Genet	2006
17008526	The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease.	Science	2006
16709585	Comparative gene marker selection suite.	Bioinformatics	2006
16642009	GenePattern 2.0.	Nat Genet	2006
17008526	The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease.	Science	2006
16709585	Comparative gene marker selection suite.	Bioinformatics	2006
16030072	GeneCruiser: a web service for the annotation of microarray data.	Bioinformatics	2005
16030072	GeneCruiser: a web service for the annotation of microarray data.	Bioinformatics	2005
16124867	Disease gene discovery through integrative genomics.	Annu Rev Genomics Hum Genet	2005
16124867	Disease gene discovery through integrative genomics.	Annu Rev Genomics Hum Genet	2005
14988123	GeneCluster 2.0: an advanced toolset for bioarray analysis.	Bioinformatics	2004
14988123	GeneCluster 2.0: an advanced toolset for bioarray analysis.	Bioinformatics	2004
12529507	Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics.	Proc Natl Acad Sci U S A	2003
12529507	Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics.	Proc Natl Acad Sci U S A	2003
11786909	Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning.	Nat Med	2002
11786909	Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning.	Nat Med	2002
11473023	Molecular classification of multiple tumor types.	Bioinformatics	2001
11742071	Multiclass cancer diagnosis using tumor gene expression signatures.	Proc Natl Acad Sci U S A	2001
11742071	Multiclass cancer diagnosis using tumor gene expression signatures.	Proc Natl Acad Sci U S A	2001
11473023	Molecular classification of multiple tumor types.	Bioinformatics	2001

1 - 46 of 46

Daniel J B Clarke

Icahn School of Medicine at Mount Sinai

Career Start Year 2018

Number of shared co-authors 0

Denis Torre

Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai

Career Start Year 2018

Number of shared co-authors 1

Ludwig Geistlinger

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 2008

Number of shared co-authors 2

Stephen R Piccolo

Brigham Young University

Career Start Year 2008

Number of shared co-authors 0

Altuna Akalin

Berlin Institute for Medical Systems Biology

Career Start Year 2006

Number of shared co-authors 1

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 3

Xianghong Jasmine Zhou

David Geffen School of Medicine, University of California at Los Angeles

Career Start Year 2004

Number of shared co-authors 0

Steffen Durinck

Genentech Inc.

Career Start Year 2004

Number of shared co-authors 1

F??tima Al-Shahrour

Spanish National Cancer Research Centre (CNIO)

Career Start Year 2003

Number of shared co-authors 6

Quaid Morris

Sloan Kettering Institute

Career Start Year 2003

Number of shared co-authors 1

Leandro C Hermida

University of Pittsburgh

Career Start Year 2003

Number of shared co-authors 3

Chunlei Wu

The Scripps Research Institute

Career Start Year 2002

Number of shared co-authors 1

Carsten O Daub

International Institute of Molecular and Cell Biology in Warsaw

Career Start Year 2002

Number of shared co-authors 1

Zhaohui S Qin

Emory University

Career Start Year 2002

Number of shared co-authors 9

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 4

Johan Rung

Uppsala University

Career Start Year 2001

Number of shared co-authors 2

Mikhail G Dozmorov

Virginia Commonwealth University

Career Start Year 2001

Number of shared co-authors 0

Hedi Peterson

Institute of Computer Science, University of Tartu

Career Start Year 2000

Number of shared co-authors 1

Joshua M Stuart

University of California at Santa Cruz

Career Start Year 2000

Number of shared co-authors 22

Ramana V Davuluri

The Wistar Institute

Career Start Year 1999

Number of shared co-authors 0

Ralf Herwig

Max Planck Institute for Molecular Genetics

Career Start Year 1998

Number of shared co-authors 1

Alvis Brazma

European Bioinformatics Institute

Career Start Year 1996

Number of shared co-authors 4

Jaak Vilo

Institute of Computer Science, University of Tartu

Career Start Year 1996

Number of shared co-authors 1

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 15

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 0

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 7

Jean-Pierre A Kocher

Mayo Clinic

Career Start Year 1991

Number of shared co-authors 0

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 8

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 2

row(s) 1 - 30 of 30

Jill P Mesirov

University of California San Diego

Co-authored papers 15

Ted Liefeld

Moores Cancer Center, University of California San Diego

Co-authored papers 10

Todd R Golub

Broad Institute of MIT and Harvard

Co-authored papers 8

Pablo Tamayo

University of California San Diego

Co-authored papers 7

Gad Getz

Broad Institute of the Massachusetts Institute of Technology and Harvard

Co-authored papers 6

Eric S Lander

Vanderbilt-Ingram Cancer Center, Vanderbilt University

Co-authored papers 6

Matthew Meyerson

Broad Institute

Co-authored papers 4

Wendy Winckler

Co-authored papers 4

Stacey Gabriel

Broad Institute of MIT and Harvard

Co-authored papers 4

Jordi Barretina

Co-authored papers 3

Supriya Gupta

The Broad Institute of Harvard and MIT

Co-authored papers 3

Joshua Gould

Co-authored papers 3

Levi A Garraway

Broad Institute of Harvard and MIT

Co-authored papers 3

Barbara L Weber

Basser Center for BRCA, Abramson Cancer Center, University of Pennsylvania

Co-authored papers 2

Manway Liu

Verily Life Sciences LLC

Co-authored papers 2

Chen-Hsiang Yeang

Institute of Statistical Science

Co-authored papers 2

Aaron Shipway

Co-authored papers 2

Kavitha Venkatesan

Co-authored papers 2

Sungjoon Kim

Co-authored papers 2

Adam A Margolin

Icahn School of Medicine

Co-authored papers 2

Eva Bric-Furlong

Co-authored papers 2

Robert C Onofrio

The Broad Institute of Harvard and MIT

Co-authored papers 2

Vamsi K Mootha

Broad Institute of MIT and Harvard

Co-authored papers 2

Jill Cheng

Co-authored papers 2

Nicolas Stransky

Co-authored papers 2

Michael F Berger

Co-authored papers 2

Adam Korejwa

Co-authored papers 2

Lauren Murray

Co-authored papers 2

Markus Warmuth

Co-authored papers 2

Helga Thorvaldsd??ttir

Broad Institute of MIT and Harvard

Co-authored papers 2

1 - 30

Author Details

Column Actions

Recommended Authors

Collaborators