Author details

Full Name

John L R Rubenstein

Affiliation

UCSF Medical School

ORCID

Career Start Year

1977

Papers

354

H Index

127

Expertise

CM4AI Collaborator

Nevan J Krogan (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36357614	Dorsoventral Arrangement of Lateral Hypothalamus Populations in the Mouse Hypothalamus: a Prosomeric Genoarchitectonic Analysis.	Mol Neurobiol	2023
37802038	Human pallial MGE-type GABAergic interneuron cell therapy for chronic focal epilepsy.	Cell Stem Cell	2023
37695031	Critical test of the assumption that the hypothalamic entopeduncular nucleus of rodents is homologous with the primate internal pallidum.	J Comp Neurol	2023
37532091	The transcription regulator Lmo3 is required for the development of medial ganglionic eminence derived neurons in the external globus pallidus.	Dev Biol	2023
37425940	Combinatorial transcription factor binding encodes cis-regulatory wiring of forebrain GABAergic neurogenesis.	bioRxiv	2023
36640767	Machine learning dissection of human accelerated regions in primate neurodevelopment.	Neuron	2023
35123407	LiCl treatment leads to long-term restoration of spine maturation and synaptogenesis in adult Tbr1 mutants.	J Neurodev Disord	2022
35377797	Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia.	Proc Natl Acad Sci U S A	2022
35695185	DLX1 and the NuRD complex cooperate in enhancer decommissioning and transcriptional repression.	Development	2022
35524141	Trans-Seq maps a selective mammalian retinotectal synapse instructed by Nephronectin.	Nat Neurosci	2022
35156680	Dlx1/2-dependent expression of Meis2 promotes neuronal fate determination in the mammalian striatum.	Development	2022
32420617	LacZ-reporter mapping of Dlx5/6 expression and genoarchitectural analysis of the postnatal mouse prethalamus.	J Comp Neurol	2021
33570495	Constructing and optimizing 3D atlases from 2D data with application to the developing mouse brain.	Elife	2021
33847916	Cracking the Codes of Cortical Glial Progenitors: Evidence for the Common Lineage of Astrocytes and Oligodendrocytes.	Neurosci Bull	2021
33782603	Ultraconserved enhancer function does not require perfect sequence conservation.	Nat Genet	2021
34921112	Transcriptional network orchestrating regional patterning of cortical progenitors.	Proc Natl Acad Sci U S A	2021
34425903	Developmental dynamics of voltage-gated sodium channel isoform expression in the human and mouse brain.	Genome Med	2021
34215582	COUP-TFI specifies the medial entorhinal cortex identity and induces differential cell adhesion to determine the integrity of its boundary with neocortex.	Sci Adv	2021
33479483	Gene regulatory networks controlling differentiation, survival, and diversification of hypothalamic Lhx6-expressing GABAergic neurons.	Commun Biol	2021
32452758	Maf and Mafb control mouse pallial interneuron fate and maturation through neuropsychiatric disease gene regulation.	Elife	2020
32027825	Optimizing Nervous System-Specific Gene Targeting with Cre Driver Lines: Prevalence of Germline Recombination and Influencing Factors.	Neuron	2020
31988060	Interneuron Transplantation Rescues Social Behavior Deficits without Restoring Wild-Type Physiology in a Mouse Model of Autism with Excessive Synaptic Inhibition.	J Neurosci	2020
33199411	Regulatory Elements Inserted into AAVs Confer Preferential Activity in Cortical Interneurons.	eNeuro	2020
33155545	Altered hippocampal-prefrontal communication during anxiety-related avoidance in mice deficient for the autism-associated gene <i>Pogz</i>.	Elife	2020
32123116	<i>Nf1</i> deletion results in depletion of the <i>Lhx6</i> transcription factor and a specific loss of parvalbumin<sup>+</sup> cortical interneurons.	Proc Natl Acad Sci U S A	2020
32234482	Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog.	Cell Rep	2020
32294447	Enhancing WNT Signaling Restores Cortical Neuronal Spine Maturation and Synaptogenesis in Tbr1 Mutants.	Cell Rep	2020
30699346	Mafb and c-Maf Have Prenatal Compensatory and Postnatal Antagonistic Roles in Cortical Interneuron Fate and Function.	Cell Rep	2019
31693884	Functionally Distinct Connectivity of Developmentally Targeted Striosome Neurons.	Cell Rep	2019
31676823	Tsc1 represses parvalbumin expression and fast-spiking properties in somatostatin lineage cortical interneurons.	Nat Commun	2019
29878134	Sp9 Regulates Medial Ganglionic Eminence-Derived Cortical Interneuron Development.	Cereb Cortex	2019
31433982	Genomic Resolution of DLX-Orchestrated Transcriptional Circuits Driving Development of Forebrain GABAergic Neurons.	Cell Rep	2019
31227709	Immature excitatory neurons develop during adolescence in the human amygdala.	Nat Commun	2019
31007884	Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer.	Mol Autism	2019
31089192	Excitation-inhibition balance as a framework for investigating mechanisms in neuropsychiatric disorders.	Mol Psychiatry	2019
30796806	Dlx1/2 are Central and Essential Components in the Transcriptional Code for Generating Olfactory Bulb Interneurons.	Cereb Cortex	2019
30377227	CTCF Governs the Identity and Migration of MGE-Derived Cortical Interneurons.	J Neurosci	2019
28981617	Transcription Factors Sp8 and Sp9 Coordinately Regulate Olfactory Bulb Interneuron Development.	Cereb Cortex	2018
30217225	Genomic analysis of transcriptional networks directing progression of cell states during MGE development.	Neural Dev	2018
30186101	The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6â¿¿ Tbr2â¿¿ Tbr1.	Front Neurosci	2018
29967281	SP8 and SP9 coordinately promote D2-type medium spiny neuron production by activating <i>Six3</i> expression.	Development	2018
30318412	Neonatal Tbr1 Dosage Controls Cortical Layer 6 Connectivity.	Neuron	2018
30545852	Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder.	Science	2018
28449024	Secretagogin is Expressed by Developing Neocortical GABAergic Neurons in Humans but not Mice and Increases Neurite Arbor Size and Complexity.	Cereb Cortex	2018
29700473	An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder.	Nat Genet	2018
29358049	Ultraconserved Enhancers Are Required for Normal Development.	Cell	2018
29632360	Tbr1 instructs laminar patterning of retinal ganglion cell dendrites.	Nat Neurosci	2018
29028946	Mouse Cntnap2 and Human CNTNAP2 ASD Alleles Cell Autonomously Regulate PV+ Cortical Interneurons.	Cereb Cortex	2018
29028947	Dlx1 and Dlx2 Promote Interneuron GABA Synthesis, Synaptogenesis, and Dendritogenesis.	Cereb Cortex	2018
27497284	The Cytokine CXCL12 Promotes Basket Interneuron Inhibitory Synapses in the Medial Prefrontal Cortex.	Cereb Cortex	2017

1 - 50 of 354

Ryan N Delgado

University of California at San Francisco

Career Start Year 2013

Number of shared co-authors 11

Jimena Andersen

Stanford University

Career Start Year 2010

Number of shared co-authors 6

Omer Ali Bayraktar

Wellcome Sanger Institute

Career Start Year 2008

Number of shared co-authors 6

Thomas Butts

Queen Mary University of London

Career Start Year 2008

Number of shared co-authors 2

Simon Hippenmeyer

Institute of Science and Technology Austria (ISTA)

Career Start Year 2002

Number of shared co-authors 3

Isabelle Bachy

University Montpellier, CNRS, INSERM

Career Start Year 2001

Number of shared co-authors 0

Ed S Lein

Allen Institute for Brain Science

Career Start Year 1999

Number of shared co-authors 22

Hoonkyo Suh

Cleveland Clinic

Career Start Year 1999

Number of shared co-authors 0

Luis C Fuentealba

University of California san francisco

Career Start Year 1999

Number of shared co-authors 4

Olivier Raineteau

Universite Claude Bernard Lyon 1, Inserm, Stem Cell and Brain Research Institute U8

Career Start Year 1998

Number of shared co-authors 3

Young-Goo Han

St. Jude Children's Research Hospital

Career Start Year 1998

Number of shared co-authors 4

Paul G Matteson

Center for Advanced Biotechnology and Medicine, Rutgers University

Career Start Year 1995

Number of shared co-authors 0

Nadia Dahmane

Weill Cornell Medical College

Career Start Year 1994

Number of shared co-authors 2

Daniel A Lim

University of California san francisco

Career Start Year 1993

Number of shared co-authors 15

Verdon Taylor

University of Basel

Career Start Year 1991

Number of shared co-authors 2

Andrew K Groves

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 1

Edwin S Monuki

University of California, University of California Irvine

Career Start Year 1989

Number of shared co-authors 5

Francesca Ciccolini

Universitat Heidelberg

Career Start Year 1989

Number of shared co-authors 0

James H Millonig

Rutgers Robert Wood Johnson Medical School, The State University of New Jersey

Career Start Year 1989

Number of shared co-authors 0

A P Monaghan

University of Missouri Kansas City School of Medicine

Career Start Year 1988

Number of shared co-authors 0

Donna M Martin

University of Michigan ann arbor

Career Start Year 1988

Number of shared co-authors 7

Andrew J W Furley

The University of Sheffield

Career Start Year 1986

Number of shared co-authors 1

Fran??ois Guillemot

the Francis Crick Institute

Career Start Year 1986

Number of shared co-authors 10

Laura L??pez-Mascaraque

Instituto Cajal -CSIC-, Spanish National Research Council

Career Start Year 1985

Number of shared co-authors 2

Christopher V E Wright

Vanderbilt University

Career Start Year 1983

Number of shared co-authors 1

Ann M Flenniken

Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Career Start Year 1980

Number of shared co-authors 4

Gail Mandel

Vollum Institute, Oregon Health and Science University

Career Start Year 1978

Number of shared co-authors 2

Derek van der Kooy

University of Toronto

Career Start Year 1977

Number of shared co-authors 2

Dan Goldowitz

University of British Columbia

Career Start Year 1972

Number of shared co-authors 6

Mario R Capecchi

University of Utah School of Medicine

Career Start Year 1965

Number of shared co-authors 3

row(s) 1 - 30 of 30

Arturo Alvarez-Buylla

University of California san francisco

Co-authored papers 21

Susan Lindtner

UCSF Weill Institute for Neurosciences, University of California san francisco

Co-authored papers 20

Stewart A Anderson

Co-authored papers 18

Axel Visel

Co-authored papers 16

Vikaas S Sohal

University of California san francisco

Co-authored papers 15

Alex S Nord

UC Davis Center for Neuroscience.

Co-authored papers 14

Arnold R Kriegstein

University of California san francisco

Co-authored papers 13

Robert F Hevner

university of california san diego School of Medicine, University of California

Co-authored papers 11

Matthew H Porteus

Stanford University

Co-authored papers 10

Len A Pennacchio

Lawrence Berkeley National Laboratory

Co-authored papers 9

Athena R Ypsilanti

UCSF Weill Institute for Neurosciences, University of California san francisco

Co-authored papers 8

Roger A Pedersen

Stanford University

Co-authored papers 7

James D Price

UCSF Weill Institute for Neurosciences, University of California san francisco

Co-authored papers 6

Diane E Dickel

Co-authored papers 5

Jennifer A Akiyama

Co-authored papers 5

Veena Afzal

Co-authored papers 4

Matthew W State

UCSF Weill Institute for Neurosciences, University of California san francisco

Co-authored papers 4

Arthur Jeremy Willsey

University of California san francisco

Co-authored papers 4

Eirene Markenscoff-Papadimitriou

Co-authored papers 4

Hongkui Zeng

Allen Institute for Brain Science

Co-authored papers 4

Jos?? Manuel Garc??a-Verdugo

Cavanilles Institute, University of Valencia

Co-authored papers 4

Ingrid Plajzer-Frick

Co-authored papers 4

Stephan J Sanders

Co-authored papers 4

Mercedes F Paredes

University of California san francisco

Co-authored papers 4

Carol L Thompson

Allen Institute for Brain Science

Co-authored papers 3

Anirban Paul

Penn State College of Medicine

Co-authored papers 3

Michael Hawrylycz

Allen Institute for Brain Science

Co-authored papers 3

Michael C Oldham

University of California san francisco

Co-authored papers 3

Wolfgang Wurst

Institute of Developmental Genetics, German Research Center for Environmental Health

Co-authored papers 3

Donna M Werling

Co-authored papers 3

1 - 30

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