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Author Details

Guorong Xu
Chinese University of Hong Kong
2010
24
18
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
33503434Inflammation-driven deaminase deregulation fuels human pre-leukemia stem cell evolution.Cell Rep2021
33771560Dust-mite-derived protein disulfide isomerase suppresses airway allergy by inducing tolerogenic dendritic cells.J Biol Chem2021
31619561The Caenorhabditis elegans RIG-I Homolog DRH-1 Mediates the Intracellular Pathogen Response upon Viral Infection.J Virol2020
31850594Rational genomic optimization of DNA detection for human papillomavirus type 16 in head and neck squamous cell carcinoma.Head Neck2020
32848210HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers.Oncogene2020
30626753Variations in HPV function are associated with survival in squamous cell carcinoma.JCI Insight2019
31478830FAK activity sustains intrinsic and acquired ovarian cancer resistance to platinum chemotherapy.Elife2019
31097695Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.Nat Commun2019
31142745Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.Nat Commun2019
30933315Mutation of chromatin regulators and focal hotspot alterations characterize human papillomavirus-positive oropharyngeal squamous cell carcinoma.Cancer2019
29659724Efficient population-scale variant analysis and prioritization with VAPr.Bioinformatics2018
29945995Characterization of Alternative Splicing Events in HPV-Negative Head and Neck Squamous Cell Carcinoma Identifies an Oncogenic DOCK5 Variant.Clin Cancer Res2018
29610481A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.Nat Genet2018
24870620MicroRNA-29c mediates initiation of gastric carcinogenesis by directly targeting ITGB1.Gut2015
26719559Correction for Strong et al., Epstein-Barr Virus and Human Herpesvirus 6 Detection in a Non-Hodgkin's Diffuse Large B-Cell Lymphoma Cohort by Using RNA Sequencing.J Virol2015
24586784RNA CoMPASS: a dual approach for pathogen and host transcriptome analysis of RNA-seq datasets.PLoS One2014
25412476Microbial contamination in next generation sequencing: implications for sequence-based analysis of clinical samples.PLoS Pathog2014
23152513Whole-genome sequencing of the Akata and Mutu Epstein-Barr virus strains.J Virol2013
24049168Epstein-Barr virus and human herpesvirus 6 detection in a non-Hodgkin's diffuse large B-cell lymphoma cohort by using RNA sequencing.J Virol2013
23671415Differences in gastric carcinoma microenvironment stratify according to EBV infection intensity: implications for possible immune adjuvant therapy.PLoS Pathog2013
22238296Detection of murine leukemia virus in the Epstein-Barr virus-positive human B-cell line JY, using a computational RNA-Seq-based exogenous agent detection pipeline, PARSES.J Virol2012
21232146SAMMate: a GUI tool for processing short read alignments in SAM/BAM format.Source Code Biol Med2011
20584899Transcriptome and targetome analysis in MIR155 expressing cells using RNA-seq.RNA2010
20943983Quantitative and qualitative RNA-Seq-based evaluation of Epstein-Barr virus transcription in type I latency Burkitt's lymphoma cells.J Virol2010
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Collaborators

Kathleen M Fisch
Center for Computational Biology and Bioinformatics, University of California
Co-authored papers 10
Christopher M Taylor
Co-authored papers 9
Shuling Ren
Beijing Friendship Hospital, Capital Medical University
Co-authored papers 7
Joseph A Califano
University of California
Co-authored papers 7
Theresa Guo
Moores Cancer Center, University of California
Co-authored papers 6
Mizuo Ando
University of Tokyo
Co-authored papers 6
Takahito Fukusumi
Osaka University Graduate School of Medicine
Co-authored papers 6
Chao Liu
Xiangya Hospital, Central South University
Co-authored papers 6
Akihiro Sakai
Tokai University
Co-authored papers 6
Yuki Saito
Niigata Prefectural Tokamachi Hospital.
Co-authored papers 4
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 4
John Pang
University of Washington
Co-authored papers 4
Alexander V Favorov
Johns Hopkins School of Medicine
Co-authored papers 4
Pablo Tamayo
University of California San Diego
Co-authored papers 3
Dongxiao Zhu
Wayne State University
Co-authored papers 3
Sayed Sadat
Moores Cancer Center, University of California San Diego
Co-authored papers 3
Elana J Fertig
Johns Hopkins University School of Medicine
Co-authored papers 3
Adam Mark
Center for Computational Biology & Bioinformatics (CCBB), University of California
Co-authored papers 3
Nan Deng
Cedars-Sinai Medical Center
Co-authored papers 3
Zubair Khan
University of Texas at Houston Health Science Center
Co-authored papers 3
Daria A Gaykalova
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
Sunny Haft
Moores Cancer Center, University of California
Co-authored papers 3
Joseph Coco
Vanderbilt University Medical Center
Co-authored papers 2
Patrick K Ha
University of California San Francisco
Co-authored papers 2
Amanda Birmingham
Center for Computational Biology & Bioinformatics , University of California
Co-authored papers 2
Alfredo A Molinolo
University of California
Co-authored papers 2
Minya Pu
University of California
Co-authored papers 2
Tatsuya Yamasoba
The University of Tokyo
Co-authored papers 2
Karen Messer
Herbert Wertheim School of Public Health, University of California San Diego
Co-authored papers 2
Kate Medetgul-Ernar
University of California San Diego Health Moores Cancer Center.
Co-authored papers 2
Release 1.2