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Author Details

Nicolas Le Nov??re
Babraham Institute
1995
156
58
PMIDPaper TitleJournal TitlePublished Year
32320309ATG13 dynamics in nonselective autophagy and mitophagy: insights from live imaging studies and mathematical modeling.Autophagy2021
32320309ATG13 dynamics in nonselective autophagy and mitophagy: insights from live imaging studies and mathematical modeling.Autophagy2021
34098590Synthetic biology open language visual (SBOL Visual) version 2.3.J Integr Bioinform2021
34098590Synthetic biology open language visual (SBOL Visual) version 2.3.J Integr Bioinform2021
32543457Synthetic biology open language visual (SBOL visual) version 2.2.J Integr Bioinform2020
32049957Neurogranin stimulates Ca2+/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies.PLoS Comput Biol2020
32543457Synthetic biology open language visual (SBOL visual) version 2.2.J Integr Bioinform2020
32049957Neurogranin stimulates Ca2+/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies.PLoS Comput Biol2020
29688273Community-driven roadmap for integrated disease maps.Brief Bioinform2019
30220022Systems Oncology: Bridging Pancreatic and Castrate Resistant Prostate Cancer.Pathol Oncol Res2019
29688273Community-driven roadmap for integrated disease maps.Brief Bioinform2019
31219795The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.J Integr Bioinform2019
30788345Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During <i>C. elegans</i> Aging.Front Mol Biosci2019
31348656Communicating Structure and Function in Synthetic Biology Diagrams.ACS Synth Biol2019
31199768Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.J Integr Bioinform2019
31375810Epicardial cells derived from human embryonic stem cells augment cardiomyocyte-driven heart regeneration.Nat Biotechnol2019
30220022Systems Oncology: Bridging Pancreatic and Castrate Resistant Prostate Cancer.Pathol Oncol Res2019
31348656Communicating Structure and Function in Synthetic Biology Diagrams.ACS Synth Biol2019
31375810Epicardial cells derived from human embryonic stem cells augment cardiomyocyte-driven heart regeneration.Nat Biotechnol2019
31199768Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.J Integr Bioinform2019
31219795The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.J Integr Bioinform2019
30788345Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During <i>C. elegans</i> Aging.Front Mol Biosci2019
28885677Significance of stroma in biology of oral squamous cell carcinoma.Tumori2018
28885677Significance of stroma in biology of oral squamous cell carcinoma.Tumori2018
30117501Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).Stand Genomic Sci2018
30488036Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism <i>Caenorhabditis elegans</i>.Front Mol Biosci2018
29872544Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms.NPJ Syst Biol Appl2018
29946055Host lipidome analysis during rhinovirus replication in HBECs identifies potential therapeutic targets.J Lipid Res2018
29447151Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation.PLoS Comput Biol2018
29522418The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.J Integr Bioinform2018
29550789Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3).J Integr Bioinform2018
29549707Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.J Integr Bioinform2018
29596055Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.J Integr Bioinform2018
29106614BioModels: expanding horizons to include more modelling approaches and formats.Nucleic Acids Res2018
29946055Host lipidome analysis during rhinovirus replication in HBECs identifies potential therapeutic targets.J Lipid Res2018
30117501Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).Stand Genomic Sci2018
29872544Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms.NPJ Syst Biol Appl2018
30488036Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism <i>Caenorhabditis elegans</i>.Front Mol Biosci2018
29447151Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation.PLoS Comput Biol2018
29550789Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3).J Integr Bioinform2018
29549707Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.J Integr Bioinform2018
29522418The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.J Integr Bioinform2018
29596055Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.J Integr Bioinform2018
29106614BioModels: expanding horizons to include more modelling approaches and formats.Nucleic Acids Res2018
28063254The Impact of Mathematical Modeling in Understanding the Mechanisms Underlying Neurodegeneration: Evolving Dimensions and Future Directions.CPT Pharmacometrics Syst Pharmacol2017
28904350Tia1 dependent regulation of mRNA subcellular location and translation controls p53 expression in B cells.Nat Commun2017
28662064Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.PLoS Biol2017
28613156Reciprocal regulation of ARPP-16 by PKA and MAST3 kinases provides a cAMP-regulated switch in protein phosphatase 2A inhibition.Elife2017
29056325PTEN Regulates PI(3,4)P<sub>2</sub> Signaling Downstream of Class I PI3K.Mol Cell2017
28395655SBpipe: a collection of pipelines for automating repetitive simulation and analysis tasks.BMC Syst Biol2017
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Collaborators

Camille Laibe
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 24
Nick Juty
University of Manchester
Co-authored papers 17
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 12
David P Nickerson
Co-authored papers 11
Sarala M Wimalaratne
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 11
Augustin Luna
Harvard Medical School
Co-authored papers 9
Martin Golebiewski
Co-authored papers 9
Jacky L Snoep
Stellenbosch University, Vrije Universiteit Amsterdam
Co-authored papers 8
Matthew Pocock
Newcastle University
Co-authored papers 7
Emek Demir
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 7
Huaiyu Mi
University of Southern California
Co-authored papers 6
Gary D Bader
University of Toronto
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Kevin Clancy
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Ontario Institute for Cancer Research
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Douglas B Kell
Novo Nordisk Foundation Centre for Biosustainability, Technical University of Denmark
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Claudine Chaouiya
Aix Marseille University CNRS
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Neil Swainston
Institute of Systems, University of Liverpool
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Michel Dumontier
Institute of Data Science, Maastricht University
Co-authored papers 5
Ugur Dogrusoz
Bilkent University
Co-authored papers 4
James Alastair McLaughlin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 4
Bernhard O Palsson
University of California San Diego
Co-authored papers 4
Janna Hastings
Institute for Implementation Science in Health Care, University of Zurich
Co-authored papers 4
Carole Goble
University of Manchester
Co-authored papers 3
Padraig Gleeson
University College London
Co-authored papers 3
Nathan E Lewis
University of California San Diego
Co-authored papers 3
Helen Parkinson
European Bioinformatics Institute
Co-authored papers 3
Marine Dumousseau
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Melissa A Haendel
Co-authored papers 3
Melissa A Haendel
American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison
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Simon Jupp
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Release 1.2