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Author Details

Alexandra Naba
College of Medicine, University of Illinois at Chicago
2008
49
29
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36116512Reduced SPAG17 Expression in Systemic Sclerosis Triggers Myofibroblast Transition and Drives Fibrosis.J Invest Dermatol2023
36399478MatrisomeDB 2.0: 2023 updates to the ECM-protein knowledge database.Nucleic Acids Res2023
36116512Reduced SPAG17 Expression in Systemic Sclerosis Triggers Myofibroblast Transition and Drives Fibrosis.J Invest Dermatol2023
37555624Matrisome AnalyzeR - a suite of tools to annotate and quantify ECM molecules in big datasets across organisms.J Cell Sci2023
37468756Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).Nat Cell Biol2023
36572230Beyond the matrisome: New frontiers in ECM research.Matrix Biol2023
37131773Matrisome AnalyzeR: A suite of tools to annotate and quantify ECM molecules in big datasets across organisms.bioRxiv2023
36999534Hepatocellular carcinomas, exhibiting intratumor fibrosis, express cancer-specific extracellular matrix remodeling and WNT/TGFB signatures, associated with poor outcome.Hepatology2023
36918099Ten Years of Extracellular Matrix Proteomics: Accomplishments, Challenges, and Future Perspectives.Mol Cell Proteomics2023
37555624Matrisome AnalyzeR - a suite of tools to annotate and quantify ECM molecules in big datasets across organisms.J Cell Sci2023
37468756Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).Nat Cell Biol2023
37131773Matrisome AnalyzeR: A suite of tools to annotate and quantify ECM molecules in big datasets across organisms.bioRxiv2023
36999534Hepatocellular carcinomas, exhibiting intratumor fibrosis, express cancer-specific extracellular matrix remodeling and WNT/TGFB signatures, associated with poor outcome.Hepatology2023
36918099Ten Years of Extracellular Matrix Proteomics: Accomplishments, Challenges, and Future Perspectives.Mol Cell Proteomics2023
36399478MatrisomeDB 2.0: 2023 updates to the ECM-protein knowledge database.Nucleic Acids Res2023
36572230Beyond the matrisome: New frontiers in ECM research.Matrix Biol2023
34866441Multi-modal Profiling of the Extracellular Matrix of Human Fallopian Tubes and Serous Tubal Intraepithelial Carcinomas.J Histochem Cytochem2022
35714875Systematic Analysis of Actively Transcribed Core Matrisome Genes Across Tissues and Cell Phenotypes.Matrix Biol2022
35654359New Views of Old Proteins: Clarifying the Enigmatic Proteome.Mol Cell Proteomics2022
36130489A proliferative to invasive switch is mediated by srGAP1 downregulation through the activation of TGF-β2 signaling.Cell Rep2022
34866441Multi-modal Profiling of the Extracellular Matrix of Human Fallopian Tubes and Serous Tubal Intraepithelial Carcinomas.J Histochem Cytochem2022
35121989A tumor-derived type III collagen-rich ECM niche regulates tumor cell dormancy.Nat Cancer2022
34994383The matrix in focus: new directions in extracellular matrix research from the 2021 ASMB hybrid meeting.Biol Open2022
35654359New Views of Old Proteins: Clarifying the Enigmatic Proteome.Mol Cell Proteomics2022
35714875Systematic Analysis of Actively Transcribed Core Matrisome Genes Across Tissues and Cell Phenotypes.Matrix Biol2022
36130489A proliferative to invasive switch is mediated by srGAP1 downregulation through the activation of TGF-β2 signaling.Cell Rep2022
35121989A tumor-derived type III collagen-rich ECM niche regulates tumor cell dormancy.Nat Cancer2022
34994383The matrix in focus: new directions in extracellular matrix research from the 2021 ASMB hybrid meeting.Biol Open2022
33012048Knockout of the gene encoding the extracellular matrix protein SNED1 results in early neonatal lethality and craniofacial malformations.Dev Dyn2021
33802493The Burden of Post-Translational Modification (PTM)-Disrupting Mutations in the Tumor Matrisome.Cancers (Basel)2021
33730931Global proteomic analysis of extracellular matrix in mouse and human brain highlights relevance to cerebrovascular disease.J Cereb Blood Flow Metab2021
33813860Fabrication, Rheological, and Compositional Characterization of Thermoresponsive Hydrogel from Cornea.Tissue Eng Part C Methods2021
33012048Knockout of the gene encoding the extracellular matrix protein SNED1 results in early neonatal lethality and craniofacial malformations.Dev Dyn2021
33813860Fabrication, Rheological, and Compositional Characterization of Thermoresponsive Hydrogel from Cornea.Tissue Eng Part C Methods2021
33730931Global proteomic analysis of extracellular matrix in mouse and human brain highlights relevance to cerebrovascular disease.J Cereb Blood Flow Metab2021
33802493The Burden of Post-Translational Modification (PTM)-Disrupting Mutations in the Tumor Matrisome.Cancers (Basel)2021
31586405MatrisomeDB: the ECM-protein knowledge database.Nucleic Acids Res2020
32019869Proteomic Profiling of the ECM of Xenograft Breast Cancer Metastases in Different Organs Reveals Distinct Metastatic Niches.Cancer Res2020
32416243Spatial-omics: Novel approaches to probe cell heterogeneity and extracellular matrix biology.Matrix Biol2020
31586405MatrisomeDB: the ECM-protein knowledge database.Nucleic Acids Res2020
32637906The liver matrisome - looking beyond collagens.JHEP Rep2020
32722287Pan-Cancer Analysis of the Genomic Alterations and Mutations of the Matrisome.Cancers (Basel)2020
32019869Proteomic Profiling of the ECM of Xenograft Breast Cancer Metastases in Different Organs Reveals Distinct Metastatic Niches.Cancer Res2020
32637906The liver matrisome - looking beyond collagens.JHEP Rep2020
32722287Pan-Cancer Analysis of the Genomic Alterations and Mutations of the Matrisome.Cancers (Basel)2020
32416243Spatial-omics: Novel approaches to probe cell heterogeneity and extracellular matrix biology.Matrix Biol2020
30371822MatrixDB: integration of new data with a focus on glycosaminoglycan interactions.Nucleic Acids Res2019
33543012<i>In-silico</i> definition of the <i>Drosophila melanogaster</i> matrisome.Matrix Biol Plus2019
33543001The <i>in-silico</i> characterization of the <i>Caenorhabditis elegans</i> matrisome and proposal of a novel collagen classification.Matrix Biol Plus2019
29964200The cancer matrisome: From comprehensive characterization to biomarker discovery.Semin Cell Dev Biol2019
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Collaborators

Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology
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Broad Institute of MIT and Harvard
Co-authored papers 6
Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology
Co-authored papers 3
The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Massachusetts Institute of Technology
Co-authored papers 2
Vanderbilt University
Co-authored papers 2
Mayo Clinic
Co-authored papers 2
Northwestern University
Co-authored papers 2
Stanford University School of Medicine
Co-authored papers 1
and Barnett Institute, Northeastern University
Co-authored papers 1
Dana-Farber Cancer Institute, Harvard Medical School
Co-authored papers 1
Co-authored papers 1
School of Cancer and Pharmaceutical Sciences, King's College London
Co-authored papers 1
Co-authored papers 1
University of Washington School of Medicine
Co-authored papers 1
Center for Advanced Tissue Imaging
Co-authored papers 1
Co-authored papers 1
Tufts Medical Center
Co-authored papers 1
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University of California
Co-authored papers 1
Stanford University School of Medicine
Co-authored papers 1
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Pacific Northwest National Laboratory
Co-authored papers 1
Brigham Young University
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University of Washington
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Brigham and Women's Hospital
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