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Author Details

Sayed Mohammad Ebrahim Sahraeian
Roche Sequencing Solutions Inc.
2010
24
15
PMIDPaper TitleJournal TitlePublished Year
34996510Achieving robust somatic mutation detection with deep learning models derived from reference data sets of a cancer sample.Genome Biol2022
35720974PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions.Cell Genom2022
35132260Curated variation benchmarks for challenging medically relevant autosomal genes.Nat Biotechnol2022
34980216Assessing reproducibility of inherited variants detected with short-read whole genome sequencing.Genome Biol2022
34504347Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing.Nat Biotechnol2021
33863366A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency.Genome Biol2021
34930391Hidden biases in germline structural variant detection.Genome Biol2021
32541955A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
32699374Author Correction: A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
30833567Deep convolutional neural networks for accurate somatic mutation detection.Nat Commun2019
28680106Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis.Nat Commun2017
27604469An expanded evaluation of protein function prediction methods shows an improvement in accuracy.Genome Biol2016
25979264SIFTER search: a web server for accurate phylogeny-based protein function prediction.Nucleic Acids Res2015
24170404PicXAA: a probabilistic scheme for finding the maximum expected accuracy alignment of multiple biological sequences.Methods Mol Biol2014
23704283Genetic structure and linkage disequilibrium in a diverse, representative collection of the C4 model plant, Sorghum bicolor.G3 (Bethesda)2013
23829350Digital genotyping of sorghum - a diverse plant species with a large repeat-rich genome.BMC Genomics2013
23874484SMETANA: accurate and scalable algorithm for probabilistic alignment of large-scale biological networks.PLoS One2013
22912671A network synthesis model for generating protein interaction network families.PLoS One2012
22730436RESQUE: network reduction using semi-Markov random walk scores for efficient querying of biological networks.Bioinformatics2012
21342569PicXAA-R: efficient structural alignment of multiple RNA sequences using a greedy approach.BMC Bioinformatics2011
22165903Enhancing the accuracy of HMM-based conserved pathway prediction using global correspondence scores.BMC Bioinformatics2011
21515632PicXAA-Web: a web-based platform for non-progressive maximum expected accuracy alignment of multiple biological sequences.Nucleic Acids Res2011
20028631Contourlet-based image watermarking using optimum detector in a noisy environment.IEEE Trans Image Process2010
20413579PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences.Nucleic Acids Res2010
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Collaborators

Chunlin Xiao
Chongqing Aier Eye Hospital
Co-authored papers 6
Fritz J Sedlazeck
Baylor College of Medicine
Co-authored papers 6
Justin M Zook
National Institute of Standards and Technology
Co-authored papers 5
Christopher E Mason
Feil Family Brain and Mind Research Institute.
Co-authored papers 5
Nathan D Olson
National Institute of Standards and Technology
Co-authored papers 4
Andrew Carroll
Google LLC
Co-authored papers 4
Huixiao Hong
Co-authored papers 4
Ming Shi
Co-authored papers 4
Weida Tong
National Center for Toxicological Research
Co-authored papers 3
Aaron M Wenger
Stanford School of Medicine
Co-authored papers 3
Jonathan Foox
Co-authored papers 3
Rebecca Kusko
Immuneering Corporation
Co-authored papers 3
Joyce Lee
Co-authored papers 3
Wenming Xiao
Human Phenome Institute and Shanghai Cancer Center, Fudan University
Co-authored papers 3
Andreas Scherer
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Co-authored papers 3
Stephen T Sherry
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 3
Nancy F Hansen
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 2
Noah Spies
Stanford University
Co-authored papers 2
Ian T Fiddes
Liver Center and Diabetes Center, University of California san francisco
Co-authored papers 2
Jennifer McDaniel
National Institute of Standards and Technology
Co-authored papers 2
Kelci Miclaus
Co-authored papers 2
Noushin Ghaffari
Prairie View A&M University
Co-authored papers 2
Adam C English
Baylor College of Medicine Human Genome Sequencing Center
Co-authored papers 2
Weichen Zhou
Chengdu First People's Hospital
Co-authored papers 2
Tieliu Shi
Co-authored papers 2
Angela Del Pozo
Instituto de Genetica Medica y Molecular (INGEMM), Hospital Universitario La Paz
Co-authored papers 2
Ken Chen
University of Texas MD Anderson Cancer Center
Co-authored papers 2
Ryan E Mills
University of Michigan Medical School ann arbor
Co-authored papers 2
Camir Ricketts
Institute for Computational Biomedicine, Weill Cornell Medicine of Cornell University
Co-authored papers 2
Alexandre Rouette
Charles-Bruneau Cancer Center, Centre Hospitalier Universitaire (CHU) Sainte-Justine
Co-authored papers 2
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