Skip to Main Content

Author Details

Olga Vitek
Khoury College of Computer Sciences, Northeastern University
2000
93
39
PMIDPaper TitleJournal TitlePublished Year
36526727Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications.Nat Protoc2023
36653529Author Correction: Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications.Nat Protoc2023
37467362Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling.J Proteome Res2023
37018319MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale.J Proteome Res2023
36496144MSstatsPTM: Statistical Relative Quantification of Posttranslational Modifications in Bottom-Up Mass Spectrometry-Based Proteomics.Mol Cell Proteomics2023
37387179Optimal adjustment sets for causal query estimation in partially observed biomolecular networks.Bioinformatics2023
36744928A noise-robust deep clustering of biomolecular ions improves interpretability of mass spectrometric images.Bioinformatics2023
36622173MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments.J Proteome Res2023
36865170Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis.bioRxiv2023
36526727Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications.Nat Protoc2023
37387179Optimal adjustment sets for causal query estimation in partially observed biomolecular networks.Bioinformatics2023
37018319MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale.J Proteome Res2023
37467362Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling.J Proteome Res2023
36653529Author Correction: Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications.Nat Protoc2023
36622173MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments.J Proteome Res2023
36744928A noise-robust deep clustering of biomolecular ions improves interpretability of mass spectrometric images.Bioinformatics2023
36496144MSstatsPTM: Statistical Relative Quantification of Posttranslational Modifications in Bottom-Up Mass Spectrometry-Based Proteomics.Mol Cell Proteomics2023
36865170Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis.bioRxiv2023
34919405Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline.J Proteome Res2022
35758817Do-calculus enables estimation of causal effects in partially observed biomolecular pathways.Bioinformatics2022
34919405Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline.J Proteome Res2022
35758817Do-calculus enables estimation of causal effects in partially observed biomolecular pathways.Bioinformatics2022
34085925Multiplexed proteomics of autophagy-deficient murine macrophages reveals enhanced antimicrobial immunity via the oxidative stress response.Elife2021
37981991Leveraging Structured Biological Knowledge for Counterfactual Inference: A Case Study of Viral Pathogenesis.IEEE Trans Big Data2021
34085925Multiplexed proteomics of autophagy-deficient murine macrophages reveals enhanced antimicrobial immunity via the oxidative stress response.Elife2021
37981991Leveraging Structured Biological Knowledge for Counterfactual Inference: A Case Study of Viral Pathogenesis.IEEE Trans Big Data2021
32234965Selection of Features with Consistent Profiles Improves Relative Protein Quantification in Mass Spectrometry Experiments.Mol Cell Proteomics2020
31888964Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition.Mol Cell Proteomics2020
32234965Selection of Features with Consistent Profiles Improves Relative Protein Quantification in Mass Spectrometry Experiments.Mol Cell Proteomics2020
32929271MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.Nat Methods2020
32680918MSstatsTMT: Statistical Detection of Differentially Abundant Proteins in Experiments with Isobaric Labeling and Multiple Mixtures.Mol Cell Proteomics2020
32732250Verification of a Blood-Based Targeted Proteomics Signature for Malignant Pleural Mesothelioma.Cancer Epidemiol Biomarkers Prev2020
32657378Deep multiple instance learning classifies subtissue locations in mass spectrometry images from tissue-level annotations.Bioinformatics2020
31888964Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition.Mol Cell Proteomics2020
32657378Deep multiple instance learning classifies subtissue locations in mass spectrometry images from tissue-level annotations.Bioinformatics2020
32680918MSstatsTMT: Statistical Detection of Differentially Abundant Proteins in Experiments with Isobaric Labeling and Multiple Mixtures.Mol Cell Proteomics2020
32732250Verification of a Blood-Based Targeted Proteomics Signature for Malignant Pleural Mesothelioma.Cancer Epidemiol Biomarkers Prev2020
32929271MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.Nat Methods2020
30671891Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows.J Am Soc Mass Spectrom2019
31597556Benchmarking comes of age.Genome Biol2019
30450913MSstatsQC 2.0: R/Bioconductor Package for Statistical Quality Control of Mass Spectrometry-Based Proteomics Experiments.J Proteome Res2019
31289117A Targeted Mass Spectrometry Strategy for Developing Proteomic Biomarkers: A Case Study of Epithelial Ovarian Cancer.Mol Cell Proteomics2019
31510675Unsupervised segmentation of mass spectrometric ion images characterizes morphology of tissues.Bioinformatics2019
30726097Comparison of Protein Quantification in a Complex Background by DIA and TMT Workflows with Fixed Instrument Time.J Proteome Res2019
30671891Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows.J Am Soc Mass Spectrom2019
31289117A Targeted Mass Spectrometry Strategy for Developing Proteomic Biomarkers: A Case Study of Epithelial Ovarian Cancer.Mol Cell Proteomics2019
31597556Benchmarking comes of age.Genome Biol2019
31510675Unsupervised segmentation of mass spectrometric ion images characterizes morphology of tissues.Bioinformatics2019
30726097Comparison of Protein Quantification in a Complex Background by DIA and TMT Workflows with Fixed Instrument Time.J Proteome Res2019
30450913MSstatsQC 2.0: R/Bioconductor Package for Statistical Quality Control of Mass Spectrometry-Based Proteomics Experiments.J Proteome Res2019
  • 1 - 50 of 186

Recommended Authors

Wout Bittremieux
University of Antwerp
Career Start Year 2014
Number of shared co-authors 6
Jesse G Meyer
Buck Institute for Research on Aging, Cedars-Sinai Medical Center
Career Start Year 2012
Number of shared co-authors 5
Kelly G Stratton
Pacific Northwest National Laboratory
Career Start Year 2010
Number of shared co-authors 4
Timo Sachsenberg
Institute for Bioinformatics and Medical Informatics, University of Tubingen
Career Start Year 2008
Number of shared co-authors 7
Richard A Scheltema
Utrecht Institute for Pharmaceutical Sciences, Utrecht University
Career Start Year 2008
Number of shared co-authors 7
Paul D Piehowski
Pacific Northwest National Laboratory
Career Start Year 2008
Number of shared co-authors 4
Laurent Gatto
de Duve Institute, Universite catholique de Louvain
Career Start Year 2007
Number of shared co-authors 15
J??rgen Cox
Max-Planck Institute of Biochemistry
Career Start Year 2006
Number of shared co-authors 11
Samuel H Payne
Brigham Young University
Career Start Year 2006
Number of shared co-authors 16
Julian Uszkoreit
Ruhr University Bochum
Career Start Year 2006
Number of shared co-authors 7
Edward L Huttlin
Harvard Medical School
Career Start Year 2006
Number of shared co-authors 1
Arnaud Droit
Centre de Recherche du CHU de Quebec-Universite, Universite Laval
Career Start Year 2005
Number of shared co-authors 5
Therese R W Clauss
Pacific Northwest National Laboratory
Career Start Year 2005
Number of shared co-authors 5
Matthew E Monroe
Pacific Northwest National Laboratory
Career Start Year 2004
Number of shared co-authors 9
Richard D LeDuc
Northwestern University
Career Start Year 2004
Number of shared co-authors 8
Yassene Mohammed
Center for Proteomics and Metabolomics, Leiden University Medical Center
Career Start Year 2003
Number of shared co-authors 3
Veit Schw??mmle
University of Southern Denmark
Career Start Year 2003
Number of shared co-authors 8
Paul M Thomas
Northwestern University
Career Start Year 2003
Number of shared co-authors 13
Bobbie-Jo M Webb-Robertson
Pacific Northwest National Laboratory
Career Start Year 2002
Number of shared co-authors 2
Marina A Gritsenko
Pacific Northwest National Laboratory
Career Start Year 2000
Number of shared co-authors 8
Hanno Steen
Boston Children's Hospital, USA Harvard Medical School, Harvard Medical School
Career Start Year 2000
Number of shared co-authors 4
Vladislav A Petyuk
Pacific Northwest National Laboratory
Career Start Year 1999
Number of shared co-authors 7
Peter Horvatovich
Groningen Research Institute of Pharmacy, University of Groningen
Career Start Year 1999
Number of shared co-authors 5
Wenqing Shui
iHuman Institute, ShanghaiTech University
Career Start Year 1998
Number of shared co-authors 0
Benno Schwikowski
Center for Bioinformatics, Institut Pasteur CNRS
Career Start Year 1997
Number of shared co-authors 7
Nathan A Yates
University of Pittsburgh School of Medicine
Career Start Year 1996
Number of shared co-authors 10
Matthias Mann
Max-Planck Institute of Biochemistry
Career Start Year 1989
Number of shared co-authors 13
David Feny??
Institute for Systems Genetics, NYU Grossman School of Medicine
Career Start Year 1989
Number of shared co-authors 14
Timothy J Griffin
University of Minnesota
Career Start Year 1985
Number of shared co-authors 3
Joshua E Elias
Addenbrooke's Hospital, University of Cambridge
Career Start Year 1985
Number of shared co-authors 3

Collaborators

Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 19
Brendan MacLean
Co-authored papers 11
Lukas Reiter
Co-authored papers 10
Ruth H??ttenhain
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 6
Alexey I Nesvizhskii
University of Michigan ann arbor
Co-authored papers 6
Michael J MacCoss
University of Washington
Co-authored papers 6
Susan E Abbatiello
The Barnett Institute of Chemical and Biological Analysis, Northeastern University
Co-authored papers 5
Parag Mallick
Stanford University
Co-authored papers 5
Mi-Youn Brusniak
Co-authored papers 4
Erik Verschueren
University of California San Francisco
Co-authored papers 4
Karen Sachs
Co-authored papers 4
Paola Picotti
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 4
Deepak Mani
Co-authored papers 3
Andrew N Hoofnagle
Co-authored papers 3
David S Campbell
Co-authored papers 3
Vagisha Sharma
Co-authored papers 3
Bernd Bodenmiller
University of Zurich
Co-authored papers 3
Cyril Galitzine
From the ++College of Science, Northeastern University
Co-authored papers 3
Steven A Carr
Broad Institute of MIT and Harvard
Co-authored papers 3
Birgit Schilling
Buck Institute for Research on Aging
Co-authored papers 3
Susan T Weintraub
University of Texas Health Science Center at San Antonio Texas78229 USA.
Co-authored papers 3
Lukas N Mueller
Co-authored papers 3
Shucha Zhang
Co-authored papers 3
Ileana M Cristea
Princeton University
Co-authored papers 2
John Yarnell
Co-authored papers 2
Bradford W Gibson
The Buck Institute for Research on Aging
Co-authored papers 2
Ludovic Gillet
ETH Zurich
Co-authored papers 2
Christoph H Borchers
McGill University
Co-authored papers 2
Yansheng Liu
Yale University School of Medicine
Co-authored papers 2
Bradley L Ackermann
Co-authored papers 2
Release 1.2