Author details

Full Name

Qi Liu

Affiliation

ORCID

Career Start Year

2007

Papers

101

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37496679	A contamination focused approach for optimizing the single-cell RNA-seq experiment.	iScience	2023
36036734	Peripheral Blood Telomere Attrition in Persons at Risk for Familial Pulmonary Fibrosis.	American Journal of Respiratory and Critical Care Medicine	2023
37664174	scDemultiplex: An iterative beta-binomial model-based method for accurate demultiplexing with hashtag oligos.	Comput Struct Biotechnol J	2023
37725664	The lncRNA MIR99AHG directs alternative splicing of by PTBP1 to enable invadopodia formation in colorectal cancer cells.		2023
37786583	Topological-Preserving Membrane Skeleton Segmentation in Multiplex Immunofluorescence Imaging.	Proc SPIE Int Soc Opt Eng	2023
36574664	Structure-based discovery of potent WD repeat domain 5Â inhibitors that demonstrate efficacy and safety in preclinical animal models.		2023
37324550	Influence of Cell-type Ratio on Spatially Resolved Single-cell Transcriptomes using the Tangram Algorithm: Based on Implementation on Single-Cell and MxIF Data.	Proc SPIE Int Soc Opt Eng	2023
37444556	Systematic Assessment of Small RNA Profiling in Human Extracellular Vesicles.		2023
37235466	Learning Relation-Enhanced Hierarchical Solver for Math Word Problems.		2023
37503744	Clinical and cellular phenotypes resulting from a founder mutation in IL10RB.		2023
37502906	Analysis of small EV proteomes reveals unique functional protein networks regulated by VAP-A.		2023
34648021	scMRMA: single cell multiresolution marker-based annotation.	Nucleic Acids Research	2022
35454854	Elevating SOX2 Downregulates MYC through a SOX2:MYC Signaling Axis and Induces a Slowly Cycling Proliferative State in Human Tumor Cells.	Cancers	2022
35650187	The SWI/SNF ATPase BRG1 facilitates multiple pro-tumorigenic gene expression programs in SMARCB1-deficient cancer cells.	Oncogenesis	2022
36223499	Scalable and model-free detection of spatial patterns and colocalization.	Genome Research	2022
35421371	VAP-A and its binding partner CERT drive biogenesis of RNA-containing extracellular vesicles at ER membrane contact sites.	Dev Cell	2022
36331283	Cross-scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images.	Multiscale Multimodal Med Imaging (2022)	2022
35863523	SMAD4 Suppresses Colitis-associated Carcinoma Through Inhibition of CCL20/CCR6-mediated Inflammation.	Gastroenterology	2022
35482476	Dysregulated ligand-receptor interactions from single-cell transcriptomics.		2022
36395771	PAX3-FOXO1 coordinates enhancer architecture, eRNA transcription, and RNA polymerase pause release at select gene targets.	Mol Cell	2022
35048125	Comprehensive evaluation of noise reduction methods for single-cell RNA sequencing data.	Briefings in Bioinformatics	2022
35279145	Interaction of lncRNA MIR100HG with hnRNPA2B1 facilitates mA-dependent stabilization of TCF7L2 mRNA and colorectal cancer progression.	Molecular Cancer	2022
35252869	Synergistic action of WDR5 and HDM2 inhibitors in SMARCB1-deficient cancer cells.		2022
35115608	WIN site inhibition disrupts a subset of WDR5 function.	Scientific Reports	2022
34757417	Intravitreal HDAC Inhibitor Belinostat Effectively Eradicates Vitreous Seeds Without Retinal Toxicity In Vivo in a Rabbit Retinoblastoma Model.	Investigative Ophthalmology and Visual Science	2021
34127402	Immu-Mela: An open resource for exploring immunotherapy-related multidimensional genomic profiles in melanoma.	Journal of Genetics and Genomics	2021
34288015	The prostaglandin pathway is activated in patients who fail medical therapy for benign prostatic hyperplasia with lower urinary tract symptoms.	Prostate	2021
33472061	Impact of WIN site inhibitor on the WDR5 interactome.	Cell Reports	2021
33839362	Beyond Programmed Death-Ligand 1: B7-H6 Emerges as a Potential Immunotherapy Target in SCLC.	Journal of Thoracic Oncology	2021
33931740	Multiple interactions of the oncoprotein transcription factor MYC with the SWI/SNF chromatin remodeler.	Oncogene	2021
33982010	Processing single-cell RNA-seq data for dimension reduction-based analyses using open-source tools.	STAR Protoc	2021
33759564	Colon epithelial cell TGFÎ² signaling modulates the expression of tight junction proteins and barrier function in mice.	American Journal of Physiology - Gastrointestinal and Liver Physiology	2021
34350656	A domain damage index to prioritizing the pathogenicity of missense variants.	Human Mutation	2021
32931889	Integrating transcriptome and metabolome variability to reveal pathogenesis of esophageal squamous cell carcinoma.		2021
33416496	MYC regulates ribosome biogenesis and mitochondrial gene expression programs through its interaction with host cell factor-1.	eLife	2021
34572448	Pan-Cancer Analysis Reveals Common and Specific Relationships between Intragenic miRNAs and Their Host Genes.	Biomedicines	2021
34461557	Blocking GRP/GRP-R signaling decreases expression of androgen receptor splice variants and inhibits tumor growth in castration-resistant prostate cancer.	Translational Oncology	2021
34910928	Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps.	Cell	2021
34903605	A pan-cancer immunogenomic atlas for immune checkpoint blockade immunotherapy.	Cancer Research	2021
34493746	The Hippo pathway regulates density-dependent proliferation of iPSC-derived cardiac myocytes.	Scientific Reports	2021
34887515	Supermeres are functional extracellular nanoparticles replete with disease biomarkers and therapeutic targets.	Nat Cell Biol	2021
34539029	A cross-platform informatics system for the Gut Cell Atlas: integrating clinical, anatomical and histological data.	Proc SPIE Int Soc Opt Eng	2021
32828819	Succinate Produced by Intestinal Microbes Promotes Specification of Tuft Cells to Suppress Ileal Inflammation.	Gastroenterology	2020
32356572	Prostatic osteopontin expression is associated with symptomatic benign prostatic hyperplasia.	Prostate	2020
31996893	WDR5 is a conserved regulator of protein synthesis gene expression.	Nucleic Acids Research	2020
32868382	KDM5B Is Essential for the Hyperactivation of PI3K/AKT Signaling in Prostate Tumorigenesis.	Cancer Research	2020
32641995	KRAS Mutation-Responsive miR-139-5p inhibits Colorectal Cancer Progression and is repressed by Wnt Signaling.	Theranostics	2020
32961174	Induction of a proliferative response in the zebrafish retina by injection of extracellular vesicles.	Experimental Eye Research	2020
32616006	Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms.	BMC Genomics	2020
32888432	Integrated Omics of Metastatic Colorectal Cancer.	Cancer Cell	2020