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Author Details

Frank DiMaio
University of Washington
2006
143
57
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37996753Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNA.Nat Methods2024
37996753Accurate prediction of protein-nucleic acid complexes using RoseTTAFoldNA.Nat Methods2024
36323866StarMap: a user-friendly workflow for Rosetta-driven molecular structure refinement.Nat Protoc2023
36323866StarMap: a user-friendly workflow for Rosetta-driven molecular structure refinement.Nat Protoc2023
37790440Computational design of sequence-specific DNA-binding proteins.bioRxiv2023
37704610De novo design of highly selective miniprotein inhibitors of integrins αvβ6 and αvβ8.Nat Commun2023
36586407Structural basis underlying specific biochemical activities of non-muscle tropomyosin isoforms.Cell Rep2023
37149653Improving de novo protein binder design with deep learning.Nat Commun2023
37398153<i>De novo</i> design of highly selective miniprotein inhibitors of integrins αvβ6 and αvβ8.bioRxiv2023
37384673Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling.Science2023
37253357Residue-level error detection in cryoelectron microscopy models.Structure2023
36865323Cyclic peptide structure prediction and design using AlphaFold.bioRxiv2023
37433327De novo design of protein structure and function with RFdiffusion.Nature2023
36859493Automatic and accurate ligand structure determination guided by cryo-electron microscopy maps.Nat Commun2023
37704610De novo design of highly selective miniprotein inhibitors of integrins αvβ6 and αvβ8.Nat Commun2023
37790440Computational design of sequence-specific DNA-binding proteins.bioRxiv2023
37253357Residue-level error detection in cryoelectron microscopy models.Structure2023
37149653Improving de novo protein binder design with deep learning.Nat Commun2023
37384673Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling.Science2023
37433327De novo design of protein structure and function with RFdiffusion.Nature2023
37398153<i>De novo</i> design of highly selective miniprotein inhibitors of integrins αvβ6 and αvβ8.bioRxiv2023
36859493Automatic and accurate ligand structure determination guided by cryo-electron microscopy maps.Nat Commun2023
36586407Structural basis underlying specific biochemical activities of non-muscle tropomyosin isoforms.Cell Rep2023
36865323Cyclic peptide structure prediction and design using AlphaFold.bioRxiv2023
35050657Structural and functional insight into regulation of kinesin-1 by microtubule-associated protein MAP7.Science2022
36108048Hallucinating symmetric protein assemblies.Science2022
35762713AlphaFold accurately predicts distinct conformations based on the oligomeric state of a de novo designed protein.Protein Sci2022
35862514Scaffolding protein functional sites using deep learning.Science2022
35667008Correction to "The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design".J Chem Theory Comput2022
35050657Structural and functional insight into regulation of kinesin-1 by microtubule-associated protein MAP7.Science2022
35239409Architecture and antigenicity of the Nipah virus attachment glycoprotein.Science2022
35210614Seipin forms a flexible cage at lipid droplet formation sites.Nat Struct Mol Biol2022
35762713AlphaFold accurately predicts distinct conformations based on the oligomeric state of a de novo designed protein.Protein Sci2022
35667008Correction to "The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design".J Chem Theory Comput2022
35862514Scaffolding protein functional sites using deep learning.Science2022
36108048Hallucinating symmetric protein assemblies.Science2022
35210614Seipin forms a flexible cage at lipid droplet formation sites.Nat Struct Mol Biol2022
35239409Architecture and antigenicity of the Nipah virus attachment glycoprotein.Science2022
33249652Perturbing the energy landscape for improved packing during computational protein design.Proteins2021
33589814BRCA1/BARD1 site-specific ubiquitylation of nucleosomal H2A is directed by BARD1.Nat Struct Mol Biol2021
33542514Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.Nat Methods2021
33577321Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein-Ligand Docking.J Chem Theory Comput2021
34272285Computational design of a synthetic PD-1 agonist.Proc Natl Acad Sci U S A2021
34042235Cryo-electron Microscopy Imaging of Alzheimer's Amyloid-beta 42 Oligomer Displayed on a Functionally and Structurally Relevant Scaffold.Angew Chem Int Ed Engl2021
33990563Electromechanical coupling mechanism for activation and inactivation of an HCN channel.Nat Commun2021
34031912Phospho-regulation, nucleotide binding and ion access control in potassium-chloride cotransporters.EMBO J2021
34188171Structure and lipid dynamics in the maintenance of lipid asymmetry inner membrane complex of A. baumannii.Commun Biol2021
34328683Discovery and Characterization of Spike N-Terminal Domain-Binding Aptamers for Rapid SARS-CoV-2 Detection.Angew Chem Int Ed Engl2021
33249652Perturbing the energy landscape for improved packing during computational protein design.Proteins2021
34734801Cryo-EM structures of CTP synthase filaments reveal mechanism of pH-sensitive assembly during budding yeast starvation.Elife2021
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Collaborators

David Baker
University of Washington
Co-authored papers 64
David Veesler
Co-authored papers 13
Edward H Egelman
University of Virginia
Co-authored papers 12
Hahnbeom Park
Co-authored papers 12
Wah Chiu
Stanford University
Co-authored papers 8
Minkyung Baek
Seoul National University
Co-authored papers 7
Paul D Adams
Lawrence Berkeley National Laboratory
Co-authored papers 7
Alexandra C Walls
Co-authored papers 7
Lauren Carter
Co-authored papers 6
Justin M Kollman
University of Washington
Co-authored papers 6
Gaetano T Montelione
Rensselaer Polytechnic Institute
Co-authored papers 6
Brian Kuhlman
Co-authored papers 6
Ivan Anishchenko
University of Washington
Co-authored papers 5
Thomas C Terwilliger
Los Alamos National Laboratory
Co-authored papers 5
Xiong Yu
University of Virginia
Co-authored papers 5
Rhiju Das
Stanford University School of Medicine
Co-authored papers 5
Matthew L Baker
McGovern Medical School at the University of Texas Health Science Center
Co-authored papers 4
Tanja Kortemme
University of California san francisco
Co-authored papers 4
Randy J Read
Cambridge Institute for Medical Research, University of Cambridge
Co-authored papers 4
Jens Meiler
Vanderbilt University
Co-authored papers 4
Jeffrey J Gray
Johns Hopkins University
Co-authored papers 4
George N Phillips
Rice University
Co-authored papers 4
Yifan Cheng
Quantitative Bioscience Institute, University of California san francisco
Co-authored papers 4
Jeliazko R Jeliazkov
Co-authored papers 4
Andres E Leschziner
Co-authored papers 3
Maofu Liao
Harvard Medical School
Co-authored papers 3
Richard Bonneau
Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation
Co-authored papers 3
Michael S Pacella
Co-authored papers 3
Roland L Dunbrack
Fox Chase Cancer Center
Co-authored papers 3
Indrajit Lahiri
Co-authored papers 3
Release 1.2