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Author Details

Keith R Jerome
Fred Hutchinson Cancer Center
1991
322
54
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37975819Cytomegalovirus (CMV) Reactivation and CMV-Specific Cell-Mediated Immunity After Chimeric Antigen Receptor T-Cell Therapy.Clin Infect Dis2024
37486790Within-Host Rhinovirus Evolution in Upper and Lower Respiratory Tract Highlights Capsid Variability and Mutation-Independent Compartmentalization.J Infect Dis2024
36712077Differences in expression of tumor suppressor, innate immune, inflammasome, and potassium/gap junction channel host genes significantly predict viral reservoir size during treated HIV infection.bioRxiv2023
38019897A cohort-based study of host gene expression: tumor suppressor and innate immune/inflammatory pathways associated with the HIV reservoir size.PLoS Pathog2023
37503290Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice.bioRxiv2023
37674004Surveillance of Vermont wildlife in 2021-2022 reveals no detected SARS-CoV-2 viral RNA.Sci Rep2023
37532126Human herpesvirus-6 reactivation and disease after allogeneic haematopoietic cell transplantation in the era of letermovir for cytomegalovirus prophylaxis.Clin Microbiol Infect2023
37126090Current HIV/SIV Reservoir Assays for Preclinical and Clinical Applications: Recommendations from the Experts 2022 NIAID Workshop Summary.AIDS Res Hum Retroviruses2023
36951943Memory T cells possess an innate-like function in local protection from mucosal infection.J Clin Invest2023
37214809Within-host rhinovirus evolution in upper and lower respiratory tract highlights capsid variability and mutation-independent compartmentalization.bioRxiv2023
37207227Efficient <i>ex vivo</i> expansion of conserved element vaccine-specific CD8+ T-cells from SHIV-infected, ART-suppressed nonhuman primates.Front Immunol2023
37074875A multiplexed barcode approach to simultaneously evaluate gene delivery by adeno-associated virus capsid variants in nonhuman primates.Hepatol Commun2023
37466213Viral Resistance Analyses From the Remdesivir Phase 3 Adaptive COVID-19 Treatment Trial-1 (ACTT-1).J Infect Dis2023
37199630Liver-Humanized NSG-PiZ Mice Support the Study of Chronic Hepatitis B Virus Infection and Antiviral Therapies.Microbiol Spectr2023
37165032Adeno-associated virus vectors and neurotoxicity-lessons from preclinical and human studies.Gene Ther2023
37162835Surveillance of Vermont wildlife in 2021-2022 reveals no detected SARS-CoV-2 viral RNA.bioRxiv2023
36695358Host variation in type I interferon signaling genes (MX1), C-C chemokine receptor type 5 gene, and major histocompatibility complex class I alleles in treated HIV+ noncontrollers predict viral reservoir size.AIDS2023
36693927Cytomegalovirus breakthrough and resistance during letermovir prophylaxis.Bone Marrow Transplant2023
36809468Using Haplotype-Based Artificial Intelligence to Evaluate SARS-CoV-2 Novel Variants and Mutations.JAMA Netw Open2023
32710762Reliability of Self-Sampling for Accurate Assessment of Respiratory Virus Viral and Immunologic Kinetics.J Infect Dis2022
35799885Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat.Virus Evol2022
35502920Identification of Omicron-Delta Coinfections Using PCR-Based Genotyping.Microbiol Spectr2022
35632815Molecular Analysis of SARS-CoV-2 Lineages in Armenia.Viruses2022
35393464Host-pathogen dynamics in longitudinal clinical specimens from patients with COVID-19.Sci Rep2022
35862190Herpes simplex virus lymphadenitis is associated with tumor reduction in a patient with chronic lymphocytic leukemia.J Clin Invest2022
35447514Correlation of initial upper respiratory tract viral burden with progression to lower tract disease in adult allogeneic hematopoietic cell transplant recipients.J Clin Virol2022
35446933Respiratory viruses in hematopoietic cell transplant candidates: impact of preexisting lower tract disease on outcomes.Blood Adv2022
36519118Stable HIV Reservoir Despite Prolonged Low-Dose Mycophenolate to Limit CD4+ T-cell Proliferation.Open Forum Infect Dis2022
35940869Using time-weighted average change from baseline of SARS-CoV-2 viral load to assess impact of hydroxychloroquine as postexposure prophylaxis and early treatment for COVID-19.J Med Virol2022
36178789Protocol for high-throughput reservoir quantification across global HIV subtypes using a cross-subtype intact proviral DNA assay.STAR Protoc2022
36146679Epstein-Barr Virus and Human Herpesvirus-6 Reactivation in Acute COVID-19 Patients.Viruses2022
36069983Application of Statistical Learning to Identify Omicron Mutations in SARS-CoV-2 Viral Genome Sequence Data From Populations in Africa and the United States.JAMA Netw Open2022
35997500Matrix Matters: Assessment of Commutability among BK Virus Assays and Standards.J Clin Microbiol2022
36272098Viral Shedding 1 Year Following First-Episode Genital HSV-1 Infection.JAMA2022
36064752Exposure to antibiotics with anaerobic activity before respiratory viral infection is associated with respiratory disease progression after hematopoietic cell transplant.Bone Marrow Transplant2022
35863699Clinical Performance Characteristics of the Swift Normalase Amplicon Panel for Sensitive Recovery of Severe Acute Respiratory Syndrome Coronavirus 2 Genomes.J Mol Diagn2022
36095012SIRT5 is a proviral factor that interacts with SARS-CoV-2 Nsp14 protein.PLoS Pathog2022
36352021Rapidly identifying new coronavirus mutations of potential concern in the Omicron variant using an unsupervised learning strategy.Sci Rep2022
36005759Chromosome-Specific Human Herpesvirus 6 Integration and Hematologic Malignancies.J Virol2022
35075180Mutations in viral nucleocapsid protein and endoRNase are discovered to associate with COVID19 hospitalization risk.Sci Rep2022
35152299Self-Assessed Severity as a Determinant of Coronavirus Disease 2019 Symptom Specificity: A Longitudinal Cohort Study.Clin Infect Dis2022
35150571Detection and Kinetics of Subgenomic Severe Acute Respiratory Syndrome Coronavirus 2 RNA Viral Load in Longitudinal Diagnostic RNA-Positive Samples.J Infect Dis2022
35006245Trajectory of Viral RNA Load Among Persons With Incident SARS-CoV-2 G614 Infection (Wuhan Strain) in Association With COVID-19 Symptom Onset and Severity.JAMA Netw Open2022
35202525Evaluation of Commercially Available High-Throughput SARS-CoV-2 Serologic Assays for Serosurveillance and Related Applications.Emerg Infect Dis2022
35173288Novel factors to predict respiratory viral disease progression in allogeneic hematopoietic cell transplant recipients.Bone Marrow Transplant2022
35058348Measuring infectious SARS-CoV-2 in clinical samples reveals a higher viral titer:RNA ratio for Delta and Epsilon vs. Alpha variants.Proc Natl Acad Sci U S A2022
35025926An international, interlaboratory ring trial confirms the feasibility of an extraction-less "direct" RT-qPCR method for reliable detection of SARS-CoV-2 RNA in clinical samples.PLoS One2022
35169803Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat.bioRxiv2022
35233566Rapidly Identifying New Coronavirus Mutations of Potential Concern in the Omicron Variant Using an Unsupervised Learning Strategy.Res Sq2022
35020436Estimation of the in vivo neutralization potency of eCD4Ig and conditions for AAV-mediated production for SHIV long-term remission.Sci Adv2022
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Collaborators

Alexander L Greninger
University of Washington Medical Center
Co-authored papers 107
Pavitra Roychoudhury
Fred Hutchinson Cancer Center
Co-authored papers 61
Anna Wald
University of Washington School of Medicine
Co-authored papers 25
Amalia Magaret
University of Washington
Co-authored papers 20
Patrick C Mathias
University of Washington
Co-authored papers 9
April K Randhawa
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Co-authored papers 7
Michael P Busch
Vitalant Research Institute
Co-authored papers 5
Mars Stone
Vitalant Research Institute
Co-authored papers 5
Steven G Deeks
University of California san francisco
Co-authored papers 5
Leonidas Stamatatos
Co-authored papers 4
Sulggi A Lee
Co-authored papers 3
Jessica Andriesen
Fred Hutchinson Cancer Center
Co-authored papers 3
Meagan E Deming
University of Maryland School of Medicine
Co-authored papers 3
Jay Shendure
University of Washington
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University of California san francisco
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Raphael J Landovitz
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Charles Y Chiu
University of California-San Francisco
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Jeffrey N Martin
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Jennifer Dien Bard
Children's Hospital Los Angeles
Co-authored papers 3
Nigam H Shah
Stanford University
Co-authored papers 2
Benjamin T Bradley
University of Washington
Co-authored papers 2
Michael K Racke
The Ohio State University Wexner Medical Center
Co-authored papers 2
Sabine Cepok
Co-authored papers 2
Akiko Iwasaki
Yale University
Co-authored papers 2
Mark J Rieder
Co-authored papers 2
Saad B Omer
Yale School of Public Health
Co-authored papers 2
Feng Zhang
Massachusetts Institute of Technology, USA Broad Institute
Co-authored papers 2
Mary Carrington
Frederick National Laboratory for Cancer Research, National Cancer Institute
Co-authored papers 2
Richard A Martinello
Yale University
Co-authored papers 2
Nathan D Grubaugh
Yale School of Public Health
Co-authored papers 2
Release 1.2