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Author Details

Trygve E Bakken
Allen Institute for Brain Science
2009
47
29
PMIDPaper TitleJournal TitlePublished Year
37079537A comparison of anatomic and cellular transcriptome structures across 40 human brain diseases.PLoS Biol2023
37667001Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution.Nat Ecol Evol2023
37790503Enhancer-AAVs allow genetic access to oligodendrocytes and diverse populations of astrocytes across species.bioRxiv2023
37824669Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex.Science2023
37824655Transcriptomic cytoarchitecture reveals principles of human neocortex organization.Science2023
37824649Interindividual variation in human cortical cell type abundance and expression.Science2023
34992294Author Correction: Human neocortical expansion involves glutamatergic neuron diversification.Nature2022
35419551Single nucleus multi-omics identifies human cortical cell regulatory genome diversity.Cell Genom2022
36417438Oligodendrocyte precursor cells ingest axons in the mouse neocortex.Proc Natl Acad Sci U S A2022
35319013Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2022
33249453FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test.Brief Bioinform2021
34616067Human neocortical expansion involves glutamatergic neuron diversification.Nature2021
34616062Comparative cellular analysis of motor cortex in human, marmoset and mouse.Nature2021
34473054Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans.Elife2021
34534454Signature morpho-electric, transcriptomic, and dendritic properties of human layer 5 neocortical pyramidal neurons.Neuron2021
34312540Recent ultra-rare inherited variants implicate new autism candidate risk genes.Nat Genet2021
34088715A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing.Genome Res2021
32127543Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons.Nat Commun2020
33372656Common cell type nomenclature for the mammalian brain.Elife2020
32522880Parallel RNA and DNA analysis after deep sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain.Proc Natl Acad Sci U S A2020
30559488Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity.Nat Genet2019
31785789Sex-Based Analysis of De Novo Variants in Neurodevelopmental Disorders.Am J Hum Genet2019
31710287Single-cell transcriptomic evidence for dense intracortical neuropeptide networks.Elife2019
31435019Conserved cell types with divergent features in human versus mouse cortex.Nature2019
31373394New insights into the development of the human cerebral cortex.J Anat2019
31483788Identification of genetic markers for cortical areas using a Random Forest classification routine and the Allen Mouse Brain Atlas.PLoS One2019
29785013Genetic identification of brain cell types underlying schizophrenia.Nat Genet2018
30150662Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type.Nat Neurosci2018
30392798h-Channels Contribute to Divergent Intrinsic Membrane Properties of Supragranular Pyramidal Neurons in Human versus Mouse Cerebral Cortex.Neuron2018
30586455Single-nucleus and single-cell transcriptomes compared in matched cortical cell types.PLoS One2018
30382198Shared and distinct transcriptomic cell types across neocortical areas.Nature2018
29590361Cell type discovery using single-cell transcriptomics: implications for ontological representation.Hum Mol Genet2018
27897007PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX.Pac Symp Biocomput2017
28279351Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation.Neuron2017
29322913Cell type discovery and representation in the era of high-content single cell phenotyping.BMC Bioinformatics2017
29144976Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation.Neuron2017
27409810A comprehensive transcriptional map of primate brain development.Nature2016
25954031Spatiotemporal dynamics of the postnatal developing primate brain transcriptome.Hum Mol Genet2015
24352235The complete genome sequence of a Neanderthal from the Altai Mountains.Nature2014
25504733Convergent transcriptional specializations in the brains of humans and song-learning birds.Science2014
24998929Disruptive CHD8 mutations define a subtype of autism early in development.Cell2014
21681750Visual system scaling in teleost fish.J Comp Neurol2012
22343285Association of common genetic variants in GPCPD1 with scaling of visual cortical surface area in humans.Proc Natl Acad Sci U S A2012
21849792A geographic cline of skull and brain morphology among individuals of European Ancestry.Hum Hered2011
21810643Association of genetic variants on 15q12 with cortical thickness and cognition in schizophrenia.Arch Gen Psychiatry2011
20538375Association between mitochondrial DNA variations and Alzheimer's disease in the ADNI cohort.Neurobiol Aging2010
19717458A common MECP2 haplotype associates with reduced cortical surface area in humans in two independent populations.Proc Natl Acad Sci U S A2009
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Co-authored papers 22
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Lydia Ng
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Rongxin Fang
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Alexander Dobin
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Boudewijn P F Lelieveldt
Leiden University Medical Center
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Fangming Xie
University of California Los Angeles
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Joseph R Ecker
The Salk Institute for Biological Studies
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Joseph R Nery
The Salk Institute for Biological Studies
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Cinnamon Bloss
University of California
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Ole A Andreassen
Oslo University Hospital & Institute of Clinical Medicine, University of Oslo
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Release 1.2