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Author Details

Ilya E Vorontsov
Vavilov Institute of General Genetics, Russian Academy of Sciences
2013
24
13
PMIDPaper TitleJournal TitlePublished Year
37971293HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors.Nucleic Acids Res2024
36350659EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes.Nucleic Acids Res2023
35446421ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs.Nucleic Acids Res2022
34260924Enhanced C/EBP binding to G·T mismatches facilitates fixation of CpG mutations in cancer and adult stem cells.Cell Rep2021
33765281Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates.Methods Mol Biol2021
34107262Enhanced C/EBP binding to G·T mismatches facilitates fixation of CpG mutations in cancer and adult stem cells.Cell Rep2021
33980847Landscape of allele-specific transcription factor binding in the human genome.Nat Commun2021
32393327Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study.Genome Biol2020
33138777A holistic view of mouse enhancer architectures reveals analogous pleiotropic effects and correlation with human disease.BMC Genomics2020
31737053What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants.Front Genet2019
29140464HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.Nucleic Acids Res2018
30352610Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data.BMC Res Notes2018
27876533Multiple single nucleotide polymorphisms in the first intron of the IL2RA gene affect transcription factor binding and enhancer activity.Gene2017
28234966The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region.PLoS One2017
29104781The Minor Variant of the Single-Nucleotide Polymorphism rs3753381 Affects the Activity of a SLAMF1 Enhancer.Acta Naturae2017
27356864Negative selection maintains transcription factor binding motifs in human cancer.BMC Genomics2016
26586801HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.Nucleic Acids Res2016
27424222Early B-cell factor 1 (EBF1) is critical for transcriptional control of SLAMF1 gene in human B cells.Biochim Biophys Acta2016
26153137EpiFactors: a comprehensive database of human epigenetic factors and complexes.Database (Oxford)2015
24670764A promoter-level mammalian expression atlas.Nature2014
23175603HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.Nucleic Acids Res2013
23427986From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites.J Bioinform Comput Biol2013
24074225Jaccard index based similarity measure to compare transcription factor binding site models.Algorithms Mol Biol2013
26955507In silico motif analysis suggests an interplay of transcriptional and translational control in mTOR response.Translation (Austin)2013
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Collaborators

Ivan V Kulakovskiy
Vavilov Institute of General Genetics, Russian Academy of Sciences
Co-authored papers 24
Vsevolod J Makeev
Vavilov Institute of General Genetics, Russian Academy of Sciences
Co-authored papers 16
Yulia A Medvedeva
Research Center of Biotechnology RAS, Russian Academy of Sciences
Co-authored papers 7
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 4
Andreas Lennartsson
Karolinska Institute
Co-authored papers 3
Finn Drabl??s
NTNU - Norwegian University of Science and Technology
Co-authored papers 3
Artem S Kasianov
Institute for Information Transmission Problems of the Russian Academy of Sciences
Co-authored papers 3
Dmitri Papatsenko
Co-authored papers 3
Alexander V Favorov
Johns Hopkins School of Medicine
Co-authored papers 3
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Ulf Schaefer
Co-authored papers 2
Robin Andersson
University of Copenhagen
Co-authored papers 1
Soichi Ogishima
Tohoku University Graduate School of Medicine
Co-authored papers 1
Suzana Savvi
South African Medical Research Council (SAMRC), University of Cape Town
Co-authored papers 1
Ernst J Wolvetang
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
Co-authored papers 1
Peter Heutink
German Center for Neurodegenerative Diseases (DZNE).
Co-authored papers 1
Vadim N Gladyshev
Brigham and Women's Hospital
Co-authored papers 1
Emmanuel Dimont
Harvard School of Public Health
Co-authored papers 1
Reto Guler
International Centre for Genetic Engineering and Biotechnology
Co-authored papers 1
Stefano Gustincich
Istituto Italiano di Tecnologia
Co-authored papers 1
Haruhiko Koseki
RIKEN Research Center for Allergy and Immunology
Co-authored papers 1
Yosuke Mizuno
Yokohama National University
Co-authored papers 1
Guojun Sheng
International Research Center for Medical Sciences (IRCMS), Kumamoto University
Co-authored papers 1
Christophe Simon
RIKEN Yokohama Institute
Co-authored papers 1
Silvano Piazza
International Centre for Genetic Engineering and Biotechnology
Co-authored papers 1
Hiroo Toyodo
Co-authored papers 1
Emily J Wood
Center for Molecular Medicine and Genetics, Wayne State University
Co-authored papers 1
Martin S Taylor
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 1
Hui Jia
Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences
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