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Author Details
Full Name
Li C Xue
Affiliation
Utrecht University
ORCID
Career Start Year
2008
Papers
25
H Index
15
Expertise
CM4AI Collaborator
Andrej Sali (CM4AI)
PMID
Paper Title
Journal Title
Published Year
36671507
MetaScore: A Novel Machine-Learning-Based Approach to Improve Traditional Scoring Functions for Scoring Protein-Protein Docking Conformations.
Biomolecules
2023
36671507
MetaScore: A Novel Machine-Learning-Based Approach to Improve Traditional Scoring Functions for Scoring Protein-Protein Docking Conformations.
Biomolecules
2023
35619705
PANDORA: A Fast, Anchor-Restrained Modelling Protocol for Peptide: MHC Complexes.
Front Immunol
2022
35619705
PANDORA: A Fast, Anchor-Restrained Modelling Protocol for Peptide: MHC Complexes.
Front Immunol
2022
34862392
DeepRank: a deep learning framework for data mining 3D protein-protein interfaces.
Nat Commun
2021
34862392
DeepRank: a deep learning framework for data mining 3D protein-protein interfaces.
Nat Commun
2021
31199455
iScore: a novel graph kernel-based function for scoring protein-protein docking models.
Bioinformatics
2020
35419466
iScore: An MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines.
SoftwareX
2020
31886559
An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.
Proteins
2020
31199455
iScore: a novel graph kernel-based function for scoring protein-protein docking models.
Bioinformatics
2020
35419466
iScore: An MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines.
SoftwareX
2020
31886559
An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.
Proteins
2020
30417935
iSEE: Interface structure, evolution, and energy-based machine learning predictor of binding affinity changes upon mutations.
Proteins
2019
31612567
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
Proteins
2019
30417935
iSEE: Interface structure, evolution, and energy-based machine learning predictor of binding affinity changes upon mutations.
Proteins
2019
30128928
Protein-ligand pose and affinity prediction: Lessons from D3R Grand Challenge 3.
J Comput Aided Mol Des
2019
31051038
Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server.
Bioinformatics
2019
30128928
Protein-ligand pose and affinity prediction: Lessons from D3R Grand Challenge 3.
J Comput Aided Mol Des
2019
31612567
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
Proteins
2019
31051038
Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server.
Bioinformatics
2019
28831657
Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.
J Comput Aided Mol Des
2018
28831657
Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.
J Comput Aided Mol Des
2018
27013645
Template-based protein-protein docking exploiting pairwise interfacial residue restraints.
Brief Bioinform
2017
28730688
Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).
Proteins
2017
27013645
Template-based protein-protein docking exploiting pairwise interfacial residue restraints.
Brief Bioinform
2017
27802573
Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.
Proteins
2017
28730688
Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).
Proteins
2017
27802573
Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.
Proteins
2017
26828269
The solution structure of the kallikrein-related peptidases inhibitor SPINK6.
Biochem Biophys Res Commun
2016
26828269
The solution structure of the kallikrein-related peptidases inhibitor SPINK6.
Biochem Biophys Res Commun
2016
27122118
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Proteins
2016
27503228
PRODIGY: a web server for predicting the binding affinity of protein-protein complexes.
Bioinformatics
2016
27122118
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Proteins
2016
27503228
PRODIGY: a web server for predicting the binding affinity of protein-protein complexes.
Bioinformatics
2016
26460190
Computational prediction of protein interfaces: A review of data driven methods.
FEBS Lett
2015
26460190
Computational prediction of protein interfaces: A review of data driven methods.
FEBS Lett
2015
23873600
DockRank: ranking docked conformations using partner-specific sequence homology-based protein interface prediction.
Proteins
2014
23873600
DockRank: ranking docked conformations using partner-specific sequence homology-based protein interface prediction.
Proteins
2014
24846307
RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins.
PLoS One
2014
24846307
RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins.
PLoS One
2014
21247125
Identifying factors controlling protein release from combinatorial biomaterial libraries via hybrid data mining methods.
ACS Comb Sci
2011
25905110
Ranking Docked Models of Protein-Protein Complexes Using Predicted Partner-Specific Protein-Protein Interfaces: A Preliminary Study.
ACM BCB
2011
21247125
Identifying factors controlling protein release from combinatorial biomaterial libraries via hybrid data mining methods.
ACS Comb Sci
2011
21682895
HomPPI: a class of sequence homology based protein-protein interface prediction methods.
BMC Bioinformatics
2011
21986107
Machine learning competition in immunology - Prediction of HLA class I binding peptides.
J Immunol Methods
2011
25905110
Ranking Docked Models of Protein-Protein Complexes Using Predicted Partner-Specific Protein-Protein Interfaces: A Preliminary Study.
ACM BCB
2011
21986107
Machine learning competition in immunology - Prediction of HLA class I binding peptides.
J Immunol Methods
2011
21682895
HomPPI: a class of sequence homology based protein-protein interface prediction methods.
BMC Bioinformatics
2011
18229711
Striking similarities in diverse telomerase proteins revealed by combining structure prediction and machine learning approaches.
Pac Symp Biocomput
2008
18229711
Striking similarities in diverse telomerase proteins revealed by combining structure prediction and machine learning approaches.
Pac Symp Biocomput
2008
1 - 50 of 50
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Bijvoet Center for Biomolecular Research, Utrecht University
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Stanford University
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Inscopix Inc.
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Utrecht University
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3
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VIB-VUB Center for Structural Biology
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Daisuke Kihara
Purdue University
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Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
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Thom Vreven
Visterra Inc.
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Xiaoqin Zou
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Ilya A Vakser
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