Author details

Full Name

Webb Miller

Affiliation

ORCID

Career Start Year

1988

Papers

202

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35962045	Author Correction: Comparative and demographic analysis of orang-utan genomes.	Nature	2022
32031213	Functional Architecture of Deleterious Genetic Variants in the Genome of a Wrangel Island Mammoth.	Genome Biol Evol	2020
30914426	Genomic Variants Among Threatened <i>Acropora</i> Corals.	G3 (Bethesda)	2019
27084454	Sex determination by SRY PCR and sequencing of Tasmanian devil facial tumour cell lines reveals non-allograft transmission.	Biochemical and Biophysical Research Communications	2016
27187213	Giraffe genome sequence reveals clues to its unique morphology and physiology.	Nat Commun	2016
26146078	Elephantid Genomes Reveal the Molecular Bases of Woolly Mammoth Adaptations to the Arctic.	Cell Rep	2015
25879703	Identification of indels in next-generation sequencing data.	BMC Bioinformatics	2015
25523037	Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs.	J Hum Evol	2015
26159619	Genome-wide analysis of signatures of selection in populations of African honey bees (Apis mellifera) using new web-based tools.	BMC Genomics	2015
24504087	Polar bears exhibit genome-wide signatures of bioenergetic adaptation to life in the arctic environment.	Genome Biology and Evolution	2014
25471224	Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history.	Nat Commun	2014
24137000	Updates of the HbVar database of human hemoglobin variants and thalassemia mutations.	Nucleic Acids Research	2014
23405114	Comparison of sequencing platforms for single nucleotide variant calls in a human sample.	PLoS One	2013
24377391	Galaxy tools to study genome diversity.	Gigascience	2013
23530231	Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar.	Proc Natl Acad Sci U S A	2013
22155688	A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar.	Genome Biol Evol	2012
22938532	Sequencing and analysis of a South Asian-Indian personal genome.	BMC Genomics	2012
22826254	Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.	Proc Natl Acad Sci U S A	2012
22454131	Revealing mammalian evolutionary relationships by comparative analysis of gene clusters.	Genome Biol Evol	2012
22948727	Some phenotype association tools in Galaxy: looking for disease SNPs in a full genome.	Curr Protoc Bioinformatics	2012
21795386	Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration.	Genome Res	2011
21270892	Comparative and demographic analysis of orang-utan genomes.	Nature	2011
21342577	Evaluation of methods for detecting conversion events in gene clusters.	BMC Bioinformatics	2011
21423179	Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach.	Nat Genet	2011
21628450	Genome-wide identification of conserved regulatory function in diverged sequences.	Genome Res	2011
21798034	Conversion events in gene clusters.	BMC Evol Biol	2011
21709235	Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil).	Proc Natl Acad Sci U S A	2011
20230626	Calling SNPs without a reference sequence.	BMC Bioinformatics	2010
20874409	An effective method for detecting gene conversion events in whole genomes.	J Comput Biol	2010
20874406	CAGE: Combinatorial Analysis of Gene-cluster Evolution.	J Comput Biol	2010
20175893	Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation.	BMC Research Notes	2010
20521245	MultiPipMaker: a comparative alignment server for multiple DNA sequences.	Curr Protoc Bioinformatics	2010
20164927	Complete Khoisan and Bantu genomes from southern Africa.	Nature	2010
20194737	Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear.	Proc Natl Acad Sci U S A	2010
19908356	Optimization methods for selecting founder individuals for captive breeding or reintroduction of endangered species.	Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing	2010
19887574	Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression.	Genome Research	2009
19645598	Evolutionary history reconstruction for Mammalian complex gene clusters.	J Comput Biol	2009
19139089	The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus).	Genome Res	2009
19741685	Prepublication data sharing.	Nature	2009
19209701	Simultaneous history reconstruction for complex gene clusters in multiple species.		2009
19432984	Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution.	BMC Evol Biol	2009
19017659	CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets.		2009
18629665	Phylogenomic resources at the UCSC Genome Browser.	Methods Mol Biol	2008
19020620	Sequencing the nuclear genome of the extinct woolly mammoth.	Nature	2008
18464734	Genome analysis of the platypus reveals unique signatures of evolution.	Nature	2008
18818370	Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif.	Genome Res	2008
18086701	The UCSC Genome Browser Database: 2008 update.	Nucleic Acids Res	2008
18787111	The infinite sites model of genome evolution.	Proc Natl Acad Sci U S A	2008
18447906	Human-macaque comparisons illuminate variation in neutral substitution rates.	Genome Biol	2008
18174420	Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry".	Science	2008