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Author Details

Alex Ignatchenko
European Bioinformatics Institute (EMBL-EBI)
2005
28
21
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
34755880Rhea, the reaction knowledgebase in 2022.Nucleic Acids Res2022
34673265A GO catalogue of human DNA-binding transcription factors.Biochim Biophys Acta Gene Regul Mech2021
30272209Updates in Rhea: SPARQLing biochemical reaction data.Nucleic Acids Res2019
30981729N-Glycoproteomics of Patient-Derived Xenografts: A Strategy to Discover Tumor-Associated Proteins in High-Grade Serous Ovarian Cancer.Cell Syst2019
29264800Proteomic Profiling of Secreted Proteins, Exosomes, and Microvesicles in Cell Culture Conditioned Media.Methods Mol Biol2018
29681158Proteomic Analysis of Cancer-Associated Fibroblasts Reveals a Paracrine Role for MFAP5 in Human Oral Tongue Squamous Cell Carcinoma.J Proteome Res2018
28716134Detecting protein variants by mass spectrometry: a comprehensive study in cancer cell-lines.Genome Med2017
27128972Proteotranscriptomic Analysis Reveals Stage Specific Changes in the Molecular Landscape of Clear-Cell Renal Cell Carcinoma.PLoS One2016
25545689VennDIS: a JavaFX-based Venn and Euler diagram software to generate publication quality figures.Proteomics2015
26146086Semi-supervised Learning Predicts Approximately One Third of the Alternative Splicing Isoforms as Functional Proteins.Cell Rep2015
24434149In-depth proteomic analyses of ovarian cancer cell line exosomes reveals differential enrichment of functional categories compared to the NCI 60 proteome.Biochem Biophys Res Commun2014
25429762Integrated omic analysis of lung cancer reveals metabolism proteome signatures with prognostic impact.Nat Commun2014
25271301Integrated omic analysis of oropharyngeal carcinomas reveals human papillomavirus (HPV)-dependent regulation of the activator protein 1 (AP-1) pathway.Mol Cell Proteomics2014
22653920Proteomic profiling of the planarian Schmidtea mediterranea and its mucous reveals similarities with human secretions and those predicted for parasitic flatworms.Mol Cell Proteomics2012
21454501Identification of novel ryanodine receptor 1 (RyR1) protein interaction with calcium homeostasis endoplasmic reticulum protein (CHERP).J Biol Chem2011
21986993Translational analysis of mouse and human placental protein and mRNA reveals distinct molecular pathologies in human preeclampsia.Mol Cell Proteomics2011
20334419In-depth proteomic analyses of direct expressed prostatic secretions.J Proteome Res2010
19536202Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology.Mol Syst Biol2009
26238752Multidimensional protein identification technology analysis highlights mitoxantrone-induced expression modulations in the primary prostate cancer cell proteome.Proteomics Clin Appl2009
18076136A proteome resource of ovarian cancer ascites: integrated proteomic and bioinformatic analyses to identify putative biomarkers.J Proteome Res2008
18788753Sequential interval motif search: unrestricted database surveys of global MS/MS data sets for detection of putative post-translational modifications.Anal Chem2008
18563251Identification of pathways associated with invasive behavior by ovarian cancer cells using multidimensional protein identification technology (MudPIT).Mol Biosyst2008
18326625Consistent blind protein structure generation from NMR chemical shift data.Proc Natl Acad Sci U S A2008
17982461In situ proteolysis for protein crystallization and structure determination.Nat Methods2007
16615898Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling.Cell2006
16554755Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.Nature2006
16305238NMR and X-ray crystallography, complementary tools in structural proteomics of small proteins.J Am Chem Soc2005
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Collaborators

Thomas Kislinger
Princess Margaret Cancer Centre, University Health Network, University of Toronto
Co-authored papers 19
Vladimir Ignatchenko
Margaret Cancer Center
Co-authored papers 12
Ankit Sinha
Max Planck Institute of Biochemistry
Co-authored papers 6
Alan Bridge
carnegie mellon university
Co-authored papers 3
Anne Morgat
Centre Medical Universitaire
Co-authored papers 3
Cheryl H Arrowsmith
University of Toronto
Co-authored papers 3
Elisabeth Coudert
Centre Medical Universitaire
Co-authored papers 3
Anthony O Gramolini
University of Toronto, University Avenue
Co-authored papers 3
Nevila Hyka-Nouspikel
Centre Medical Universitaire
Co-authored papers 3
Janet Rossant
The Hospital for Sick Children
Co-authored papers 3
Paul C Boutros
University of California los angeles
Co-authored papers 3
Igor Jurisica
Schroeder Arthritis Institute
Co-authored papers 3
Andrew Emili
Boston University School of Medicine, Boston University
Co-authored papers 3
Lucila Aimo
Centre Medical Universitaire
Co-authored papers 3
Kristian B Axelsen
Centre Medical Universitaire
Co-authored papers 3
Timothy R Hughes
University of Toronto
Co-authored papers 2
Colin Logie
Radboud Institute for Molecular Science, Radboud University
Co-authored papers 2
Jeffrey A Medin
Medical College of Wisconsin
Co-authored papers 2
Aled M Edwards
University of Toronto
Co-authored papers 2
Julius O Nyalwidhe
Eastern Virginia Medical School
Co-authored papers 2
Javier A Alfaro
International Centre for Cancer Vaccine Science, University of Gdansk
Co-authored papers 2
Elena Evdokimova
University of Toronto
Co-authored papers 2
Brian O'Sullivan
Princess Margaret Cancer Centre/University Health Network, University of Toronto
Co-authored papers 2
Yang Shen
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Co-authored papers 2
Wei Xu
Princess Margaret Cancer Centre
Co-authored papers 2
Salvador Mejia-Guerrero
Princess Margaret Cancer Center, University Health Network
Co-authored papers 2
Maria J Martin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Myra Canete
Co-authored papers 2
Fei-Fei Liu
Princess Margaret Cancer Centre, University Health Network, University of Toronto
Co-authored papers 2
Alexei Savchenko
University of Toronto
Co-authored papers 2
Release 1.2