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Author Details

Judy D Wall
University of Missouri
1974
138
41
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37065130Large-scale genetic characterization of the model sulfate-reducing bacterium, <i>Desulfovibrio vulgaris</i> Hildenborough.Front Microbiol2023
37155857Generation of zero-valent sulfur from dissimilatory sulfate reduction in sulfate-reducing microorganisms.Proc Natl Acad Sci U S A2023
34061571Genetic Basis of Chromate Adaptation and the Role of the Pre-existing Genetic Divergence during an Experimental Evolution Study with Desulfovibrio vulgaris Populations.mSystems2021
33737356Deletion Mutants, Archived Transposon Library, and Tagged Protein Constructs of the Model Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough.Microbiol Resour Announc2021
32417512Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer.Chemosphere2020
33391236Novel Mode of Molybdate Inhibition of <i>Desulfovibrio vulgaris</i> Hildenborough.Front Microbiol2020
32934357Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris.ISME J2020
32817099Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature.mBio2020
30536693A new family of transcriptional regulators of tungstoenzymes and molybdate/tungstate transport.Environ Microbiol2019
33570484<i>Pseudodesulfovibrio mercurii</i> sp. nov., a mercury-methylating bacterium isolated from sediment.Int J Syst Evol Microbiol2019
31260289Determining the Reliability of Measuring Mercury Cycling Gene Abundance with Correlations with Mercury and Methylmercury Concentrations.Environ Sci Technol2019
31371536Complete Genome Sequence of Desulfovibrio desulfuricans IC1, a Sulfonate-Respiring Anaerobe.Microbiol Resour Announc2019
30807684Adaptation of Desulfovibrio alaskensis G20 to perchlorate, a specific inhibitor of sulfate reduction.Environ Microbiol2019
30943208Correction: Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics.PLoS Genet2019
31028026Kinetics of Enzymatic Mercury Methylation at Nanomolar Concentrations Catalyzed by HgcAB.Appl Environ Microbiol2019
30964892LurR is a regulator of the central lactate oxidation pathway in sulfate-reducing Desulfovibrio species.PLoS One2019
30289197Iron- and aluminium-induced depletion of molybdenum in acidic environments impedes the nitrogen cycle.Environ Microbiol2019
29324779Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics.PLoS Genet2018
30619187Deconstructing the Dissimilatory Sulfate Reduction Pathway: Isotope Fractionation of a Mutant Unable of Growth on Sulfate.Front Microbiol2018
29730766A novel whole-cell biosensor of Pseudomonas aeruginosa to monitor the expression of quorum sensing genes.Appl Microbiol Biotechnol2018
29769716Mutant phenotypes for thousands of bacterial genes of unknown function.Nature2018
29429007Cr(VI) reduction and physiological toxicity are impacted by resource ratio in Desulfovibrio vulgaris.Appl Microbiol Biotechnol2018
29150503Carbon Amendments Alter Microbial Community Structure and Net Mercury Methylation Potential in Sediments.Appl Environ Microbiol2018
28848534Mechanisms of Chromium and Uranium Toxicity in <i>Pseudomonas stutzeri</i> RCH2 Grown under Anaerobic Nitrate-Reducing Conditions.Front Microbiol2017
28448069Systems biology guided by XCMS Online metabolomics.Nat Methods2017
28320772Mechanism for microbial population collapse in a fluctuating resource environment.Mol Syst Biol2017
28319099The direct role of selenocysteine in [NiFeSe] hydrogenase maturation and catalysis.Nat Chem Biol2017
29138306Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, <i>Desulfovibrio vulgaris</i>.mBio2017
29042504Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by <i>Desulfovibrio vulgaris</i> Hildenborough.mBio2017
28572320Complete Genome Sequencing of <i>Streptomyces</i> sp. Strain MOE7, Which Produces an Extracellular Polysaccharide with Antioxidant and Antitumor Activities.Genome Announc2017
28837108Isolation, Characterization and Bioactivities of an Extracellular Polysaccharide Produced from Streptomyces sp. MOE6.Molecules2017
26873250Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported.Mol Cell Proteomics2016
27270746Electron transfer pathways of formate-driven H2 production in Desulfovibrio.Appl Microbiol Biotechnol2016
27422835Development and Validation of Broad-Range Qualitative and Clade-Specific Quantitative Molecular Probes for Assessing Mercury Methylation in the Environment.Appl Environ Microbiol2016
27474723Novel Metal Cation Resistance Systems from Mutant Fitness Analysis of Denitrifying Pseudomonas stutzeri.Appl Environ Microbiol2016
27045776Global Isotope Metabolomics Reveals Adaptive Strategies for Nitrogen Assimilation.ACS Chem Biol2016
26803021Solids Retention Time Dependent Phototrophic Growth and Population Changes in Chemostat Cultivation Using Wastewater.Water Environ Res2016
25367508The FlxABCD-HdrABC proteins correspond to a novel NADH dehydrogenase/heterodisulfide reductase widespread in anaerobic bacteria and involved in ethanol metabolism in Desulfovibrio vulgarisâ¿¿Hildenborough.Environ Microbiol2015
26404608Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum.Genome Announc2015
26283774Regulation of Nitrite Stress Response in Desulfovibrio vulgaris Hildenborough, a Model Sulfate-Reducing Bacterium.J Bacteriol2015
26210106A Post-Genomic View of the Ecophysiology, Catabolism and Biotechnological Relevance of Sulphate-Reducing Prokaryotes.Adv Microb Physiol2015
25848870Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.ISME J2015
25662968Sulfur isotope fractionation during the evolutionary adaptation of a sulfate-reducing bacterium.Appl Environ Microbiol2015
25724962Site-directed mutagenesis of HgcA and HgcB reveals amino acid residues important for mercury methylation.Appl Environ Microbiol2015
25534748Independence of nitrate and nitrite inhibition of Desulfovibrio vulgaris Hildenborough and use of nitrite as a substrate for growth.Environ Sci Technol2015
25313388Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH.J Bacteriol2015
24242254New model for electron flow for sulfate reduction in Desulfovibrio alaskensis G20.Appl Environ Microbiol2014
25566209Biofilm growth mode promotes maximum carrying capacity and community stability during product inhibition syntrophy.Front Microbiol2014
25267659Erosion of functional independence early in the evolution of a microbial mutualism.Proc Natl Acad Sci U S A2014
25120537Identification of a cyclic-di-GMP-modulating response regulator that impacts biofilm formation in a model sulfate reducing bacterium.Front Microbiol2014
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Collaborators

Lawrence Berkeley National Laboratory
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University of Missouri
Co-authored papers 36
Institute for Environmental Genomics, University of Oklahoma
Co-authored papers 24
University of Tennessee
Co-authored papers 22
Environmental Microbiomics Research Center, Sun Yat-Sen University
Co-authored papers 20
Center for Biofilm Engineering (CBE), Montana State University
Co-authored papers 18
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Co-authored papers 18
Oak Ridge National Laboratory
Co-authored papers 17
University of Tennessee
Co-authored papers 13
Joint BioEnergy Institute
Co-authored papers 13
University of Oklahoma
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University of California berkeley
Co-authored papers 10
Lawrence Berkeley National Laboratory
Co-authored papers 10
E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago
Co-authored papers 10
University of Rhode Island
Co-authored papers 8
Co-authored papers 8
Oak Ridge National Laboratory
Co-authored papers 8
Lawrence Berkeley National Laboratory
Co-authored papers 8
Massachusetts Institute of Technology 21 Ames St. Cambridge
Co-authored papers 7
Lawrence Berkeley National Laboratory
Co-authored papers 7
Broad Institute of MIT and Harvard
Co-authored papers 7
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Co-authored papers 7
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Co-authored papers 6
Lawrence Berkeley National Laboratory
Co-authored papers 6
University of Georgia
Co-authored papers 6
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University of Georgia
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Lawrence Berkeley National Laboratory
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University of Washington Bothell
Co-authored papers 6
Southern Illinois University
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