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Author Details

James Zou
Stanford University
2016
38
15
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36658200Analyses of canine cancer mutations and treatment outcomes using real-world clinico-genomics data of 2119 dogs.NPJ Precis Oncol2023
37592105A visual-language foundation model for pathology image analysis using medical Twitter.Nat Med2023
37521038GPT detectors are biased against non-native English writers.Patterns (N Y)2023
37280185Machine learning modeling of RNA structures: methods, challenges and future perspectives.Brief Bioinform2023
37440627Implications of predicting race variables from medical images.Science2023
37173305Brain proteomic analysis implicates actin filament processes and injury response in resilience to Alzheimer's disease.Nat Commun2023
37104717Leveraging physiology and artificial intelligence to deliver advancements in health care.Physiol Rev2023
37162839TISSUE: uncertainty-calibrated prediction of single-cell spatial transcriptomics improves downstream analyses.bioRxiv2023
36774377A spectral method for assessing and combining multiple data visualizations.Nat Commun2023
36905928From patterns to patients: Advances in clinical machine learning for cancer diagnosis, prognosis, and treatment.Cell2023
36899160Subcellular omics: a new frontier pushing the limits of resolution, complexity and throughput.Nat Methods2023
35332099Classification and clustering of RNA crosslink-ligation data reveal complex structures and homodimers.Genome Res2022
35773542Systematic pan-cancer analysis of mutation-treatment interactions using large real-world clinicogenomics data.Nat Med2022
35449371Machine Learning Prediction of Clinical Trial Operational Efficiency.AAPS J2022
36357512Graph deep learning for the characterization of tumour microenvironments from spatial protein profiles in tissue specimens.Nat Biomed Eng2022
36050550Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data.Nat Genet2022
33691019TrueImage: A Machine Learning Algorithm to Improve the Quality of Telehealth Photos.Pac Symp Biocomput2021
33827925BABEL enables cross-modality translation between multiomic profiles at single-cell resolution.Proc Natl Acad Sci U S A2021
33847263Mouse aging cell atlas analysis reveals global and cell type-specific aging signatures.Elife2021
33863957Data valuation for medical imaging using Shapley value and application to a large-scale chest X-ray dataset.Sci Rep2021
32220894RNA-GPS predicts high-resolution RNA subcellular localization and highlights the role of splicing.RNA2020
33328091Deep learning models to detect hidden clinical correlates.Lancet Digit Health2020
32973096Deep profiling of protease substrate specificity enabled by dual random and scanned human proteome substrate phage libraries.Proc Natl Acad Sci U S A2020
32673562RNA-GPS Predicts SARS-CoV-2 RNA Residency to Host Mitochondria and Nucleolus.Cell Syst2020
32151271A benchmark of algorithms for the analysis of pooled CRISPR screens.Genome Biol2020
32511373RNA-GPS Predicts SARS-CoV-2 RNA Localization to Host Mitochondria and Nucleolus.bioRxiv2020
30478442A primer on deep learning in genomics.Nat Genet2019
31695204Sex and gender analysis improves science and engineering.Nature2019
31359007Large dataset enables prediction of repair after CRISPR-Cas9 editing in primary T cells.Nat Biotechnol2019
31366926Fast and covariate-adaptive method amplifies detection power in large-scale multiple hypothesis testing.Nat Commun2019
31304381VetTag: improving automated veterinary diagnosis coding via large-scale language modeling.NPJ Digit Med2019
30944357Modeling Spatial Correlation of Transcripts with Application to Developing Pancreas.Sci Rep2019
29615513Word embeddings quantify 100 years of gender and ethnic stereotypes.Proc Natl Acad Sci U S A2018
30041907A novel FADS2 isoform identified in human milk fat globule suppresses FADS2 mediated ο6-desaturation of omega-3 fatty acids.Prostaglandins Leukot Essent Fatty Acids2018
29849030Exploring patterns enriched in a dataset with contrastive principal component analysis.Nat Commun2018
31304339DeepTag: inferring diagnoses from veterinary clinical notes.NPJ Digit Med2018
30311373The clinical imperative for inclusivity: Race, ethnicity, and ancestry (REA) in genomics.Hum Mutat2018
27188529Positive Selection on a Regulatory Insertion-Deletion Polymorphism in FADS2 Influences Apparent Endogenous Synthesis of Arachidonic Acid.Mol Biol Evol2016
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Collaborators

Howard Y Chang
Center for Personal Dynamic Regulomes, Stanford University
Co-authored papers 4
Carlos D Bustamante
Stanford University
Co-authored papers 2
Zhenqin Wu
Stanford University
Co-authored papers 2
Thomas J Montine
Stanford University
Co-authored papers 2
Eric Shifrut
Gladstone-UCSF Institute of Genomic Immunology
Co-authored papers 1
Joseph L DeRisi
University of California San Francisco
Co-authored papers 1
Michael J Gandal
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
Caitlin S Latimer
University of Washington
Co-authored papers 1
David Ouyang
Smidt Heart Institute, Cedars-Sinai Medical Center
Co-authored papers 1
Eric B Larson
University of Washington
Co-authored papers 1
Mathew W Wright
Stanford University School of Medicine
Co-authored papers 1
Soumya Raychaudhuri
Brigham and Women's Hospital and Harvard Medical School
Co-authored papers 1
Erin M Ramos
National Human Genome Research Institute
Co-authored papers 1
Amalio Telenti
Vir Biotechnology Inc.
Co-authored papers 1
Shantao Li
Yale University
Co-authored papers 1
Jonathan V Sweedler
University of Illinois at Urbana-Champaign
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Ann Marie Egloff
Harvard Medical School, Brigham and Women's Hospital
Co-authored papers 1
Ryan T Leenay
North Carolina State University
Co-authored papers 1
Daniel L Rubin
Stanford University.
Co-authored papers 1
Xueqiu Lin
Co-authored papers 1
James Eberwine
Co-authored papers 1
Junhyong Kim
Co-authored papers 1
Hera Canaj
Co-authored papers 1
Judd F Hultquist
Northwestern University Feinberg School of Medicine
Co-authored papers 1
Ravindra Uppaluri
Brigham and Women's Hospital
Co-authored papers 1
Michael J MacCoss
University of Washington
Co-authored papers 1
Seung K Kim
Stanford University School of Medicine
Co-authored papers 1
Deborah I Ritter
Baylor College of Medicine
Co-authored papers 1
Alexander Marson
Gladstone-UCSF Institute of Genomic Immunology
Co-authored papers 1
Release 1.2