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Author Details

Volkan Atalay
Middle East Technical University
1999
21
10
PMIDPaper TitleJournal TitlePublished Year
36736370ProFAB-open protein functional annotation benchmark.Brief Bioinform2023
37387156Transfer learning for drug-target interaction prediction.Bioinformatics2023
35801913SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins.Bioinformatics2022
33067636MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery.Bioinformatics2021
34910274Data Centric Molecular Analysis and Evaluation of Hepatocellular Carcinoma Therapeutics Using Machine Intelligence-Based Tools.J Gastrointest Cancer2021
34181736CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations.Nucleic Acids Res2021
33094316iBioProVis: interactive visualization and analysis of compound bioactivity space.Bioinformatics2020
31089211DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks.Sci Rep2019
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
30084866Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases.Brief Bioinform2019
29098713Large-scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants.Proteins2018
30241466ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature.BMC Bioinformatics2018
29783871EClerize: A customized force-directed graph drawing algorithm for biological graphs with EC attributes.J Bioinform Comput Biol2018
24682035Identification of novel reference genes based on MeSH categories.PLoS One2014
23042589A signal transduction score flow algorithm for cyclic cellular pathway analysis, which combines transcriptome and ChIP-seq data.Mol Biosyst2012
20824206GOPred: GO molecular function prediction by combined classifiers.PLoS One2010
21355502Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering.Int J Data Min Bioinform2010
18243801Subsequence-based feature map for protein function classification.Comput Biol Chem2008
15598837Implicit motif distribution based hybrid computational kernel for sequence classification.Bioinformatics2005
18238208Silhouette-based 3-D model reconstruction from multiple images.IEEE Trans Syst Man Cybern B Cybern2003
18267415Subband domain coding of binary textual images for document archiving.IEEE Trans Image Process1999
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Collaborators

Rengul Cetin-Atalay
Middle East Technical University
Co-authored papers 18
Tunca Do??an
Hacettepe University
Co-authored papers 12
Ahmet Sureyya Rifaioglu
Iskenderun Technical University
Co-authored papers 11
Maria J Martin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 9
Rabie Saidi
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Alperen Dalkiran
Middle East Technical University (METU)
Co-authored papers 2
Naihui Zhou
The First Affiliated Hospital of Soochow University
Co-authored papers 1
Itamar Borukhov
Institute of Biotechnology, University of Helsinki
Co-authored papers 1
Md Nafiz Hamid
Iowa State University
Co-authored papers 1
Larry Davis
Co-authored papers 1
Radoslav Davidovic
Institute of Nuclear Sciences Vinca, University of Belgrade
Co-authored papers 1
Mohammad R K Mofrad
University of California Berkeley
Co-authored papers 1
Sa??o D??eroski
Jozef Stefan Institute
Co-authored papers 1
Domenico Cozzetto
Imperial College London
Co-authored papers 1
Marco Mesiti
Universita degli Studi di Milano
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Neven Sumonja
Institute of Nuclear Sciences VINCA, University of Belgrade
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Magdalena Kotlicka-Antczak
Medical University of Lodz
Co-authored papers 1
Alan J Medlar
Co-authored papers 1
Rui Fa
University College London
Co-authored papers 1
Sabeur Aridhi
Universite de Lorraine, CNRS
Co-authored papers 1
Qizhong Mao
Temple University
Co-authored papers 1
Fabio Fabris
University of Kent
Co-authored papers 1
Wei-Cheng Tseng
Taipei Veterans General Hospital
Co-authored papers 1
Christophe Dessimoz
University of Lausanne
Co-authored papers 1
Gage S Black
Brigham Young University
Co-authored papers 1
Suyang Dai
Fudan University
Co-authored papers 1
Maxat Kulmanov
King Abdullah University of Science and Technology.
Co-authored papers 1
Kai Hakala
University of Turku
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Tomislav ??muc
Ruder Boskovic Institute
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Release 1.2