Author details

Full Name

Suzanna E Lewis

Affiliation

Lawrence Berkeley National Laboratory

ORCID

Career Start Year

1996

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35411350	Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.	medRxiv	2022
35411350	Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.	medRxiv	2022
34697637	OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.	Database (Oxford)	2021
34697637	OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.	Database (Oxford)	2021
30726205	Apollo: Democratizing genome annotation.	PLoS Comput Biol	2019
30726205	Apollo: Democratizing genome annotation.	PLoS Comput Biol	2019
31548717	Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.	Nat Genet	2019
31548717	Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.	Nat Genet	2019
28968857	Gearing up to handle the mosaic nature of life in the quest for orthologs.	Bioinformatics	2018
28968857	Gearing up to handle the mosaic nature of life in the quest for orthologs.	Bioinformatics	2018
30224793	Model organism data evolving in support of translational medicine.	Lab Anim (NY)	2018
30224793	Model organism data evolving in support of translational medicine.	Lab Anim (NY)	2018
27812951	The Vision and Challenges of the Gene Ontology.	Methods Mol Biol	2017
27899636	The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.	Nucleic Acids Res	2017
27812951	The Vision and Challenges of the Gene Ontology.	Methods Mol Biol	2017
27899636	The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.	Nucleic Acids Res	2017
27043882	Standardized benchmarking in the quest for orthologs.	Nat Methods	2016
27043882	Standardized benchmarking in the quest for orthologs.	Nat Methods	2016
27412096	MSAViewer: interactive JavaScript visualization of multiple sequence alignments.	Bioinformatics	2016
27072794	JBrowse: a dynamic web platform for genome visualization and analysis.	Genome Biol	2016
27569544	A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease.	Am J Hum Genet	2016
27516611	Navigating the Phenotype Frontier: The Monarch Initiative.	Genetics	2016
28025345	Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes.	Database (Oxford)	2016
27664130	The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.	J Biomed Semantics	2016
28025345	Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes.	Database (Oxford)	2016
27664130	The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.	J Biomed Semantics	2016
27412096	MSAViewer: interactive JavaScript visualization of multiple sequence alignments.	Bioinformatics	2016
27516611	Navigating the Phenotype Frontier: The Monarch Initiative.	Genetics	2016
27569544	A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease.	Am J Hum Genet	2016
27072794	JBrowse: a dynamic web platform for genome visualization and analysis.	Genome Biol	2016
25562316	Finding our way through phenotypes.	PLoS Biol	2015
25562316	Finding our way through phenotypes.	PLoS Biol	2015
25957950	The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.	Database (Oxford)	2015
26713234	Emerging semantics to link phenotype and environment.	PeerJ	2015
26092691	Disease insights through cross-species phenotype comparisons.	Mamm Genome	2015
26269093	Use of model organism and disease databases to support matchmaking for human disease gene discovery.	Hum Mutat	2015
26133389	Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.	Genome Biol Evol	2015
26119816	The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease.	Am J Hum Genet	2015
26153621	Anatomy of BioJS, an open source community for the life sciences.	Elife	2015
26269093	Use of model organism and disease databases to support matchmaking for human disease gene discovery.	Hum Mutat	2015
26713234	Emerging semantics to link phenotype and environment.	PeerJ	2015
26133389	Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.	Genome Biol Evol	2015
26153621	Anatomy of BioJS, an open source community for the life sciences.	Elife	2015
26119816	The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease.	Am J Hum Genet	2015
26092691	Disease insights through cross-species phenotype comparisons.	Mamm Genome	2015
25957950	The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.	Database (Oxford)	2015
24217912	The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.	Nucleic Acids Res	2014
25315429	Deletions of chromosomal regulatory boundaries are associated with congenital disease.	Genome Biol	2014
24217912	The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.	Nucleic Acids Res	2014
24162188	Improved exome prioritization of disease genes through cross-species phenotype comparison.	Genome Res	2014

1 - 50 of 194

Alex Warwick Vesztrocy

University of Lausanne

Career Start Year 2017

Number of shared co-authors 12

Cyrus Afrasiabi

The Scripps Research Institute

Career Start Year 2013

Number of shared co-authors 6

Alfonso E Romero

University of Miami

Career Start Year 2012

Number of shared co-authors 24

Olivier Sallou

Institut de Recherche en Informatique et Systemes Aleatoires, Rennes University

Career Start Year 2011

Number of shared co-authors 11

James Malone

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 65

Simon Jupp

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 44

Robert Hoehndorf

King Abdullah University of Science and Technology

Career Start Year 2006

Number of shared co-authors 44

Toshiaki Katayama

Database Center for Life Science

Career Start Year 2004

Number of shared co-authors 36

Steven Vercruysse

Norwegian University of Science and Technology (NTNU)

Career Start Year 2004

Number of shared co-authors 12

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 7

Don Gilbert

Indiana University

Career Start Year 2002

Number of shared co-authors 40

Chunlei Wu

The Scripps Research Institute

Career Start Year 2002

Number of shared co-authors 21

Andrew I Su

The Scripps Research Institute

Career Start Year 2001

Number of shared co-authors 28

Tony Burdett

European Bioinformatics Institute

Career Start Year 2000

Number of shared co-authors 51

Nicola Mulder

University of Cape Town

Career Start Year 1999

Number of shared co-authors 107

Matthew Pocock

Newcastle University

Career Start Year 1998

Number of shared co-authors 23

Frederick P Roth

University of Toronto

Career Start Year 1998

Number of shared co-authors 24

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 4

Katherine Wolstencroft

Leiden Institute of Advanced Computer Science, Leiden University

Career Start Year 1997

Number of shared co-authors 35

Iddo Friedberg

Iowa State University

Career Start Year 1997

Number of shared co-authors 62

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Career Start Year 1993

Number of shared co-authors 32

Inna Dubchak

Lawrence Berkeley National Laboratory

Career Start Year 1993

Number of shared co-authors 76

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 33

Cathy H Wu

Georgetown University Medical Center

Career Start Year 1992

Number of shared co-authors 72

Kei-Hoi Cheung

Yale University School of Medicine

Career Start Year 1992

Number of shared co-authors 15

Gabriel F Berriz

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 5

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 9

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 73

Kim D Pruitt

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1989

Number of shared co-authors 87

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 103

row(s) 1 - 30 of 30

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 42

Michael Ashburner

University of Cambridge

Co-authored papers 24

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 18

Melissa A Haendel

Co-authored papers 18

Sebastian K??hler

Division of Emergency Medicine University of Calgary Calgary Alberta Canada.

Co-authored papers 16

Peter N Robinson

William Harvey Research Institute, Queen Mary University of London

Co-authored papers 16

Damian Smedley

William Harvey Research Institute, Queen Mary University of London

Co-authored papers 15