Author details

Full Name

Anthony Gitter

Affiliation

University of Wisconsin

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35165892	Bayes optimal informer sets for early-stage drug discovery.	Biometrics	2023
37625010	Evaluating Scalable Supervised Learning for Synthesize-on-Demand Chemical Libraries.	J Chem Inf Model	2023
36540972	Graph algorithms for predicting subcellular localization at the pathway level	Pac Symp Biocomput	2023
36542656	Alternative splicing liberates a cryptic cytoplasmic isoform of mitochondrial MECR that antagonizes influenza virus.	PLoS Biol	2022
35758797	An approachable, flexible and practical machine learning workshop for biologists.	Bioinformatics	2022
34815338	Neural networks to learn protein sequence-function relationships from deep mutational scanning data.	Proc Natl Acad Sci U S A	2021
33623016	Automating parameter selection to avoid implausible biological pathway models.	NPJ Syst Biol Appl	2021
33381832	Inferring signaling pathways with probabilistic programming.	Bioinformatics	2020
31661592	Classifying T cell activity in autofluorescence intensity images with convolutional neural networks.	J Biophotonics	2020
31948388	Lag penalized weighted correlation for time series clustering.	BMC Bioinformatics	2020
30500183	Practical Model Selection for Prospective Virtual Screening.	J Chem Inf Model	2019
31233491	Open collaborative writing with Manubot.	PLoS Comput Biol	2019
31518132	Learning Drug Functions from Chemical Structures with Convolutional Neural Networks and Random Forests.	J Chem Inf Model	2019
29738528	Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response.	PLoS Comput Biol	2018
30257219	Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data.	Cell Rep	2018
29618526	Opportunities and obstacles for deep learning in biology and medicine.	J R Soc Interface	2018
28257516	Integrated systems biology analysis of KSHV latent infection reveals viral induction and reliance on peroxisome mediated lipid metabolism.	PLoS Pathog	2017
26235087	The SDREM Method for Reconstructing Signaling and Regulatory Response Networks: Applications for Studying Disease Progression.	Methods Mol Biol	2016
27096930	Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package.	PLoS Comput Biol	2016
24297532	Sharing information to reconstruct patient-specific pathways in heterogeneous diseases.	Pac Symp Biocomput	2014
25522349	Multitask learning of signaling and regulatory networks with application to studying human response to flu.	PLoS Comput Biol	2014
23064748	Linking the signaling cascades and dynamic regulatory networks controlling stress responses.	Genome Res	2013
23812988	Identifying proteins controlling key disease signaling pathways.	Bioinformatics	2013
22897824	DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data.	BMC Syst Biol	2012
22805708	Studying and modelling dynamic biological processes using time-series gene expression data.	Nat Rev Genet	2012
22916002	A network-based approach for predicting missing pathway interactions.	PLoS Comput Biol	2012
21109539	Discovering pathways by orienting edges in protein interaction networks.	Nucleic Acids Res	2011
22060466	Computationally efficient measure of topological redundancy of biological and social networks.	Phys Rev E Stat Nonlin Soft Matter Phys	2011
20827605	Computational methods for analyzing dynamic regulatory networks.	Methods Mol Biol	2010
19536199	Backup in gene regulatory networks explains differences between binding and knockout results.	Mol Syst Biol	2009
17951840	CBioC: beyond a prototype for collaborative annotation of molecular interactions from the literature.	Comput Syst Bioinformatics Conf	2007

1 - 31 of 31

Marinka Zitnik

Harvard Medical School

Career Start Year 2013

Number of shared co-authors 1

Jian Peng

University of Illinois

Career Start Year 2009

Number of shared co-authors 1

Anna Ritz

Reed College

Career Start Year 2007

Number of shared co-authors 0

Yuanfang Guan

University of Michigan ann arbor

Career Start Year 2007

Number of shared co-authors 8

Woochang Hwang

College of Medicine, Hanyang University

Career Start Year 2006

Number of shared co-authors 0

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 0

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Stephen A Ramsey

Oregon State University

Career Start Year 2004

Number of shared co-authors 0

Julio Saez-Rodriguez

Institute of Computational Biomedicine, Heidelberg University

Career Start Year 2004

Number of shared co-authors 0

Tanusya M Murali

Yong Loo Lin School of Medicine, National University of Singapore

Career Start Year 2003

Number of shared co-authors 1

Su-In Lee

University of Washington

Career Start Year 2003

Number of shared co-authors 2

Rune Linding

Humboldt-Universitat zu Berlin

Career Start Year 2002

Number of shared co-authors 0

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 7

Daphne Koller

Stanford University

Career Start Year 2001

Number of shared co-authors 1

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 0

Roded Sharan

Tel Aviv University

Career Start Year 2000

Number of shared co-authors 0

Joshua M Stuart

University of California at Santa Cruz

Career Start Year 2000

Number of shared co-authors 0

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 0

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 1

Vlado Dan????k

Broad Institute

Career Start Year 1997

Number of shared co-authors 1

Trey Ideker (CM4AI)

University of California San Diego

Career Start Year 1996

Number of shared co-authors 3

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 0

Dennis Shasha

Courant Institute of Mathematical Sciences, New York University

Career Start Year 1994

Number of shared co-authors 1

Hiroshi Mamitsuka

Institute for Chemical Research, Kyoto University

Career Start Year 1994

Number of shared co-authors 1

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 1

Jason E McDermott

Pacific Northwest National Laboratory

Career Start Year 1993

Number of shared co-authors 1

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 0

Andrea Califano

Columbia University

Career Start Year 1993

Number of shared co-authors 2

Tommi S Jaakkola

Massachusetts Institute of Technology

Career Start Year 1992

Number of shared co-authors 1

Richard Bonneau

Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation

Career Start Year 1983

Number of shared co-authors 1

row(s) 1 - 30 of 30

Ziv Bar-Joseph

Carnegie Mellon University

Co-authored papers 10

Ernest Fraenkel

Co-authored papers 3

Alejandro Wolf-Yadlin

University of Washington

Co-authored papers 2

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 2

Casey S Greene

Co-authored papers 2

Daniel S Himmelstein

University of Pennsylvania

Co-authored papers 2

Gail L Rosen

Drexel University

Co-authored papers 1

Jason Ernst

Co-authored papers 1

Gregory P Way