| 36814836 | Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies. | Cell Rep Methods | 2023 |
| 37853256 | Author Correction: Enhancing untargeted metabolomics using metadata-based source annotation. | Nat Biotechnol | 2023 |
| 35293790 | Transcriptional Profiles of a Foliar Fungal Endophyte (<i>Pestalotiopsis</i>, Ascomycota) and Its Bacterial Symbiont (<i>Luteibacter</i>, <i>Gammaproteobacteria</i>) Reveal Sulfur Exchange and Growth Regulation during Early Phases of Symbiotic Interaction. | mSystems | 2022 |
| 35477286 | Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype. | mSystems | 2022 |
| 35798960 | Enhancing untargeted metabolomics using metadata-based source annotation. | Nat Biotechnol | 2022 |
| 35369727 | Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy. | mSystems | 2022 |
| 35713407 | A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities. | Biotechniques | 2022 |
| 36179670 | Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions. | Cell | 2022 |
| 35968805 | Postnatal exposure to ambient air pollutants is associated with the composition of the infant gut microbiota at 6-months of age. | Gut Microbes | 2022 |
| 35293792 | Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases. | mSystems | 2022 |
| 33947809 | Correction for Vangay et al., "Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities". | mSystems | 2021 |
| 33622857 | Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities. | mSystems | 2021 |
| 33512248 | A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. | Biotechniques | 2021 |
| 33482920 | Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. | Microbiome | 2021 |
| 34424832 | Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California. | Gut Microbes | 2021 |
| 33941606 | Erratum: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information. | Genome Res | 2021 |
| 34103074 | SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment. | Microbiome | 2021 |
| 32540955 | Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information. | Genome Res | 2020 |
| 33200135 | A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. | bioRxiv | 2020 |
| 33236030 | Microbial context predicts SARS-CoV-2 prevalence in patients and the hospital built environment. | medRxiv | 2020 |
| 32839765 | Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment. | Res Sq | 2020 |
| 32184365 | Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome. | mSystems | 2020 |
| 31671129 | Soil-borne fungi influence seed germination and mortality, with implications for coexistence of desert winter annual plants. | PLoS One | 2019 |
| 31672155 | Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity. | Genome Biol | 2019 |
| 28936944 | Bacterial Endosymbionts: Master Modulators of Fungal Phenotypes. | Microbiol Spectr | 2017 |
| 28382021 | An Endohyphal Bacterium (<i>Chitinophaga</i>, Bacteroidetes) Alters Carbon Source Use by <i>Fusarium keratoplasticum</i> (<i>F. solani</i> Species Complex, Nectriaceae). | Front Microbiol | 2017 |