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Author Details

Ruth Dannenfelser
2010
19
14
PMIDPaper TitleJournal TitlePublished Year
37632792Joint embedding of biological networks for cross-species functional alignment.2023
35537413An activation to memory differentiation trajectory of tumor-infiltrating lymphocytes informs metastatic melanoma outcomes.Cancer Cell2022
35365602Current progress and open challenges for applying deep learning across the biosciences.Nat Commun2022
33910979SynNotch-CAR T cells overcome challenges of specificity, heterogeneity, and persistence in treating glioblastoma.Sci Transl Med2021
32916097Discriminatory Power of Combinatorial Antigen Recognition in Cancer T Cell Therapies.Cell Syst2020
30377556Serum cytokine levels in breast cancer patients during neoadjuvant treatment with bevacizumab.Oncoimmunology2018
28699527Bioinformatics Approaches to Profile the Tumor Microenvironment for Immunotherapeutic Discovery.Curr Pharm Des2017
28915659Data-driven analysis of immune infiltrate in a large cohort of breast cancer and its association with disease progression, ER activity, and genomic complexity.Oncotarget2017
28666115IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment.Cell2017
25351767Lymphocyte Invasion in IC10/Basal-Like Breast Tumors Is Associated with Wild-Type TP53.Mol Cancer Res2015
23749960Network2Canvas: network visualization on a canvas with enrichment analysis.Bioinformatics2013
23794736ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells.Database (Oxford)2013
22824380Sets2Networks: network inference from repeated observations of sets.BMC Syst Biol2012
22748121Genes2FANs: connecting genes through functional association networks.BMC Bioinformatics2012
22495311Patterns and rates of exonic de novo mutations in autism spectrum disorders.Nature2012
21995939Genes2WordCloud: a quick way to identify biological themes from gene lists and free text.Source Code Biol Med2011
21349871FNV: light-weight flash-based network and pathway viewer.Bioinformatics2011
22219718Recovering protein-protein and domain-domain interactions from aggregation of IP-MS proteomics of coregulator complexes.PLoS Comput Biol2011
20507581JCoDA: a tool for detecting evolutionary selection.BMC Bioinformatics2010
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