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Author Details

Imad Abugessaisa
RIKEN Center for Integrative Medical Sciences
2013
34
17
PMIDPaper TitleJournal TitlePublished Year
37817005OVCH1 Antisense RNA 1 is differentially expressed between non-frail and frail old adults.Geroscience2024
36853658Computational approach to evaluate scRNA-seq data quality and gene body coverage with SkewC.STAR Protoc2023
35146392SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data.iScience2022
36577377Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.Cell Rep2022
33211864FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs.Nucleic Acids Res2021
33599920A robust machine learning framework to identify signatures for frailty: a nested case-control study in four aging European cohorts.Geroscience2021
34521352The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.BMC Genom Data2021
32718981Comparative transcriptomics of primary cells in vertebrates.Genome Res2020
30407557Update of the FANTOM web resource: expansion to provide additional transcriptome atlases.Nucleic Acids Res2019
31075273refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites.J Mol Biol2019
30420245Incidence and risk factors for adalimumab and infliximab anti-drug antibodies in rheumatoid arthritis: A European retrospective multicohort analysis.Semin Arthritis Rheum2019
30664627C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.Nat Commun2019
29045713SCPortalen: human and mouse single-cell centric database.Nucleic Acids Res2018
30538238Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.Sci Data2018
27896719Genome Annotation.Methods Mol Biol2017
28451981The FANTOM5 Computation Ecosystem: Genomic Information Hub for Promoters and Active Enhancers.Methods Mol Biol2017
28241135An atlas of human long non-coding RNAs with accurate 5' ends.Nature2017
29087374Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.Sci Data2017
29182598Monitoring transcription initiation activities in rat and dog.Sci Data2017
28972578Linking FANTOM5 CAGE peaks to annotations with CAGEscan.Sci Data2017
28829439An integrated expression atlas of miRNAs and their promoters in human and mouse.Nat Biotechnol2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28850105FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies.Sci Data2017
27794045Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.Nucleic Acids Res2017
27402679FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki.Database (Oxford)2016
25723102Gateways to the FANTOM5 promoter level mammalian expression atlas.Genome Biol2015
25993734Laboratory biomarkers and frailty: presentation of the FRAILOMIC initiative.Clin Chem Lab Med2015
25678556Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.Science2015
25032990Data integration in the era of omics: current and future challenges.BMC Syst Biol2014
25471042Systems Medicine: from molecular features and models to the clinic in COPD.J Transl Med2014
25203647Accelerating translational research by clinically driven development of an informatics platform--a case study.PLoS One2014
25033091STATegra EMS: an Experiment Management System for complex next-generation omics experiments.BMC Syst Biol2014
23370412Pediatric systems medicine: evaluating needs and opportunities using congenital heart block as a case study.Pediatr Res2013
23548156Implementation of the CDC translational informatics platform--from genetic variants to the national Swedish Rheumatology Quality Register.J Transl Med2013
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Collaborators

Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 25
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 18
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 17
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 17
Marina Lizio
Cerevance Ltd
Co-authored papers 15
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 15
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 15
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 12
Jayson Harshbarger
RIKEN Center for Integrative Medical Sciences
Co-authored papers 12
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 11
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 10
Shuhei Noguchi
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 9
Jesper Tegn??r
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 8
Chung-Chau Hon
RIKEN center for Integrative Medical Sciences, Hiroshima University
Co-authored papers 8
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 7
Atsushi Kondo
Tokyo University of Agriculture and Technology
Co-authored papers 7
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 7
David Gomez-Cabrero
King Abdullah University of Science and Technology
Co-authored papers 6
Jordan A Ramilowski
Advanced Medical Research Center, Yokohama City University
Co-authored papers 6
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 6
Peter Heutink
German Center for Neurodegenerative Diseases (DZNE).
Co-authored papers 5
Mizuho Sakai
University of California berkeley
Co-authored papers 5
Sachi Kato
RIKEN Center for Life Science Technologies
Co-authored papers 5
Nicolas Bertin
University Bordeaux, CNRS
Co-authored papers 5
Michihira Tagami
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Co-authored papers 5
Serkan Sahin
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Release 1.2