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Author Details

Dmitry M Avtonomov
2010
17
12
PMIDPaper TitleJournal TitlePublished Year
37533638Targeted proteomics data interpretation with DeepMRM.2023
33568339PTM-Shepherd: Analysis and Summarization of Post-Translational and Chemical Modifications From Open Search Results.Mol Cell Proteomics2021
32616513Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant.Mol Cell Proteomics2020
32338005Crystal-C: A Computational Tool for Refinement of Open Search Results.J Proteome Res2020
31923397Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2020
32792501Identification of modified peptides using localization-aware open search.Nat Commun2020
32669682Philosopher: a versatile toolkit for shotgun proteomics data analysis.Nat Methods2020
30523686DeltaMass: Automated Detection and Visualization of Mass Shifts in Proteomic Open-Search Results.J Proteome Res2019
31675502Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2019
29278491IMTBX and Grppr: Software for Top-Down Proteomics Utilizing Ion Mobility-Mass Spectrometry.Anal Chem2018
28394336MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics.Nat Methods2017
27306858BatMass: a Java Software Platform for LC-MS Data Visualization in Proteomics and Metabolomics.J Proteome Res2016
25599550DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics.Nat Methods2015
25429062LuciPHOr2: site localization of generic post-translational modifications from tandem mass spectrometry data.Bioinformatics2015
23862393[Tear fluid proteome variability in healthy donors].Rossiiskii fiziologicheskii zhurnal imeni I.M. Sechenova / Rossiiskaia akademiia nauk2013
21721250[Data filtration for more robust alignment of chromatograms of complex peptide mixtures].Bioorganicheskaya Khimiya2011
20632944Accurate mass tag retention time database for urine proteome analysis by chromatography--mass spectrometry.Biochemistry (Moscow)2010
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