Author details

Full Name

Tatiana Nikolskaya

Affiliation

ORCID

Career Start Year

1994

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
28849560	Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated "Knowledge-Based" Platform.	Methods in Molecular Biology	2017
26000039	Reconstitution of the ERG Gene Expression Network Reveals New Biomarkers and Therapeutic Targets in ERG Positive Prostate Tumors.	Journal of Cancer	2015
23770079	Molecular profiling of human mammary gland links breast cancer risk to a p27(+) cell population with progenitor characteristics.	Cell Stem Cell	2013
25474898	[Expression of bioinformatically identified genes in skin of psoriasis patients].	Genetika	2013
23176192	Knowledge-based analysis of proteomics data.	BMC Bioinformatics	2012
22583392	Prediction of organ toxicity endpoints by QSAR modeling based on precise chemical-histopathology annotations.		2012
22448124	Putative multifunctional signature of lung metastases in dedifferentiated chondrosarcoma.	Sarcoma	2012
21633165	The JAK2/STAT3 signaling pathway is required for growth of CD44âºCD24â» stem cell-like breast cancer cells in human tumors.	J Clin Invest	2011
21398405	Functional synergies yet distinct modulators affected by genetic alterations in common human cancers.	Cancer Res	2011
21533021	Epigenetic regulation of cell type-specific expression patterns in the human mammary epithelium.	PLoS Genet	2011
20064235	Effect of training-sample size and classification difficulty on the accuracy of genomic predictors.	Breast Cancer Res	2010
21045080	Gene expression profiling of human breast tissue samples using SAGE-Seq.	Genome Res	2010
20676074	The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.	Nat Biotechnol	2010
20676069	Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes.	Pharmacogenomics J	2010
20676066	Genomic indicators in the blood predict drug-induced liver injury.	Pharmacogenomics J	2010
20676064	Consistency of predictive signature genes and classifiers generated using different microarray platforms.	Pharmacogenomics J	2010
20377895	Integrated network analysis of transcriptomic and proteomic data in psoriasis.	BMC Systems Biology	2010
20158879	Bimodal gene expression patterns in breast cancer.	BMC Genomics	2010
20098637	Proteins That Underlie Neoplastic Progression of Ulcerative Colitis.	Proteomics Clin Appl	2009
19309513	Identifying disease-specific genes based on their topological significance in protein networks.	BMC Systems Biology	2009
19426536	Network analysis of human glaucomatous optic nerve head astrocytes.	BMC Med Genomics	2009
19334540	[The comparative analysis of psoriasis and Crohn disease molecular-genetical processes under pathological conditions].	Molekulyarnaya Biologiya	2009
19776212	Use of short-term transcriptional profiles to assess the long-term cancer-related safety of environmental and industrial chemicals.	Toxicol Sci	2009
19597786	Functional analysis of OMICs data and small molecule compounds in an integrated "knowledge-based" platform.	Methods in Molecular Biology	2009
18852474	Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers.	Proc Natl Acad Sci U S A	2008
19014478	A comprehensive functional analysis of tissue specificity of human gene expression.	BMC Biology	2008
19010930	Genome-wide functional synergy between amplified and mutated genes in human breast cancer.	Cancer Res	2008
18455123	Regulation of in situ to invasive breast carcinoma transition.	Cancer Cell	2008
18772397	Core signaling pathways in human pancreatic cancers revealed by global genomic analyses.	Science	2008
18772396	An integrated genomic analysis of human glioblastoma multiforme.	Science	2008
18780791	Cell type-specific DNA methylation patterns in the human breast.	Proc Natl Acad Sci U S A	2008
18318125	[Transcription factor AP-1 components as a psoriasis candidate genes].	Molekulyarnaya Biologiya	2007
17892536	Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis.		2007
17932254	The genomic landscapes of human breast and colorectal cancers.	Science	2007
17349583	Molecular definition of breast tumor heterogeneity.	Cancer Cell	2007
16988414	Pathway mapping tools for analysis of high content data.	Methods in Molecular Biology	2007
17118913	Algorithms for network analysis in systems-ADME/Tox using the MetaCore and MetaDrug platforms.	Xenobiotica	2006
16381662	A combined approach to drug metabolism and toxicity assessment.	Drug Metabolism and Disposition	2006
16340081	Using proteomics and network analysis to elucidate the consequences of synaptic protein oxidation in a PS1 + AbetaPP mouse model of Alzheimer's disease.	Journal of Alzheimer's Disease	2005
15871913	A novel method for generation of signature networks as biomarkers from complex high throughput data.	Toxicology Letters	2005
15608136	A novel method for visualizing nuclear hormone receptor networks relevant to drug metabolism.	Drug Metabolism and Disposition	2005
15808345	Techniques: application of systems biology to absorption, distribution, metabolism, excretion and toxicity.	Trends in Pharmacological Sciences	2005
15894230	Biological networks and analysis of experimental data in drug discovery.	Drug Discovery Today	2005
16922645	Computational prediction of human drug metabolism.	Expert Opinion on Drug Metabolism and Toxicology	2005
15231683	Kohonen maps for prediction of binding to human cytochrome P450 3A4.	Drug Metabolism and Disposition	2004
15269187	Quantitative structure-metabolism relationship modeling of metabolic N-dealkylation reaction rates.	Drug Metabolism and Disposition	2004
15170344	Sry-directed sex reversal in transgenic mice is robust with respect to enhanced DNA bending: comparison of human and murine HMG boxes.	Biochemistry	2004
14960390	Early prediction of drug metabolism and toxicity: systems biology approach and modeling.	Drug Discovery Today	2004
12904067	Modeling of human cytochrome p450-mediated drug metabolism using unsupervised machine learning approach.	Journal of Medicinal Chemistry	2003
10588759	Herbicide sensitivity determinant of wheat plastid acetyl-CoA carboxylase is located in a 400-amino acid fragment of the carboxyltransferase domain.	Proc Natl Acad Sci U S A	1999