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Author Details

Jonathan E Bard
University at Buffalo
2007
47
19
PMIDPaper TitleJournal TitlePublished Year
36726292High-Resolution Transcriptomic Landscape of the Human Submandibular Gland.J Dent Res2023
37406038Robust Performance of SARS-CoV-2 Whole-Genome Sequencing from Wastewater with a Nonselective Virus Concentration Method.ACS ES T Water2023
36715342Key transcription factors influence the epigenetic landscape to regulate retinal cell differentiation.Nucleic Acids Res2023
36754446Modulation of the mitochondrial Ca<sup>2+</sup> uniporter complex subunit expression by different shear stress patterns in vascular endothelial cells.Physiol Rep2023
36263047Tristetraprolin limits age-related expansion of myeloid-derived suppressor cells.Front Immunol2022
35686905Complex mutation profiles in mismatch repair and ribonucleotide reductase mutants reveal novel repair substrate specificity of MutS homolog (MSH) complexes.Genetics2022
35712470p63 Directs Subtype-Specific Gene Expression in HPV+ Head and Neck Squamous Cell Carcinoma.Front Oncol2022
35912202Multimodal Dimension Reduction and Subtype Classification of Head and Neck Squamous Cell Tumors.Front Oncol2022
33978512A Global Vista of the Epigenomic State of the Mouse Submandibular Gland.J Dent Res2021
33674582Single cell transcriptomics reveals lineage trajectory of retinal ganglion cells in wild-type and Atoh7-null retinas.Nat Commun2021
33784385A selection-based next generation sequencing approach to develop robust, genotype-specific mutation profiles in Saccharomyces cerevisiae.G3 (Bethesda)2021
34658914Discovering Myeloid Cell Heterogeneity in Mandibular Bone - Cell by Cell Analysis.Front Physiol2021
31477832Reactivation of super-enhancers by KLF4 in human Head and Neck Squamous Cell Carcinoma.Oncogene2020
32807093Comparative genomic analysis of a Shiga toxin-producing Escherichia coli (STEC) O145:H25 associated with a severe pediatric case of hemolytic uremic syndrome in Davidson County, Tennessee, US.BMC Genomics2020
32738044Developmental regulation of edited CYb and COIII mitochondrial mRNAs is achieved by distinct mechanisms in Trypanosoma brucei.Nucleic Acids Res2020
32932139p63 and Its Target Follistatin Maintain Salivary Gland Stem/Progenitor Cell Function through TGF-β/Activin Signaling.iScience2020
32818803CHRFAM7A: A human specific fusion gene, accounts for the translational gap for cholinergic strategies in Alzheimer's disease.EBioMedicine2020
32238801Endothelialization of arterial vascular grafts by circulating monocytes.Nat Commun2020
31255287Attenuation of PRRX2 and HEY2 enables efficient conversion of adult human skin fibroblasts to neurons.Biochem Biophys Res Commun2019
31666517Thermotolerance in the pathogen Cryptococcus neoformans is linked to antigen masking via mRNA decay-dependent reprogramming.Nat Commun2019
30195586Circulating microRNAs as biomarkers in traumatic brain injury.Neuropharmacology2019
31209240Contribution of DNA methylation to the expression of FCGRT in human liver and myocardium.Sci Rep2019
31623513Transcriptomic and Single-Cell Analysis of the Murine Parotid Gland.J Dent Res2019
30325262RYR1 and CACNA1S genetic variants identified with statin-associated muscle symptoms.Pharmacogenomics2018
29905532Chronic vitamin D insufficiency impairs physical performance in C57BL/6J mice.Aging (Albany NY)2018
30232460Genetic and scRNA-seq Analysis Reveals Distinct Cell Populations that Contribute to Salivary Gland Development and Maintenance.Sci Rep2018
29873258Thymosin beta 4 induces significant changes in the plasma miRNA profile following severe traumatic brain injury in the rat lateral fluid percussion injury model.Expert Opin Biol Ther2018
27594409Analysis of Heteroplasmic Variants in the Cardiac Mitochondrial Genome of Individuals with Down Syndrome.Hum Mutat2017
28535252Trypanosome RNA Editing Mediator Complex proteins have distinct functions in gRNA utilization.Nucleic Acids Res2017
26768665οNp63 regulates IL-33 and IL-31 signaling in atopic dermatitis.Cell Death Differ2016
26908922High-throughput sequencing of partially edited trypanosome mRNAs reveals barriers to editing progression and evidence for alternative editing.RNA2016
25202826RNA-seq studies reveal new insights into p63 and the transcriptomic landscape of the mouse skin.J Invest Dermatol2015
25923916Global Developmental Gene Programing Involves a Nuclear Form of Fibroblast Growth Factor Receptor-1 (FGFR1).PLoS One2015
25879881An automated method for efficient, accurate and reproducible construction of RNA-seq libraries.BMC Res Notes2015
26020802MicroRNA analysis suggests an additional level of feedback regulation in the NF-κB signaling cascade.Oncotarget2015
26024952Variation analysis of transcriptome changes reveals cochlear genes and their associated functions in cochlear susceptibility to acoustic overstimulation.Hear Res2015
25519701Sunitinib dose escalation overcomes transient resistance in clear cell renal cell carcinoma and is associated with epigenetic modifications.Mol Cancer Ther2015
25073603Structural changes in the gut microbiome of constipated patients.Physiol Genomics2014
25311735Molecular profile of cochlear immunity in the resident cells of the organ of Corti.J Neuroinflammation2014
23727008Transcriptome characterization by RNA-Seq reveals the involvement of the complement components in noise-traumatized rat cochleae.Neuroscience2013
23748164FOXO1 regulates expression of a microRNA cluster on X chromosome.Aging (Albany NY)2013
22302569ArchTEx: accurate extraction and visualization of next-generation sequence data.Bioinformatics2012
23100416Metalloproteinases and their associated genes contribute to the functional integrity and noise-induced damage in the cochlear sensory epithelium.J Neurosci2012
22559821Standardized collection of MNase-seq experiments enables unbiased dataset comparisons.BMC Mol Biol2012
22573177Chromatin architectures at fission yeast transcriptional promoters and replication origins.Nucleic Acids Res2012
21378186Whole-genome sequencing of Staphylococcus aureus strain RN4220, a key laboratory strain used in virulence research, identifies mutations that affect not only virulence factors but also the fitness of the strain.J Bacteriol2011
17989687The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.Nat Biotechnol2007
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Collaborators

Michael J Buck
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Co-authored papers 13
Satrajit Sinha
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Co-authored papers 9
Rose-Anne Romano
State University of New York at Buffalo
Co-authored papers 7
Jason M Rizzo
University of Michigan ann arbor
Co-authored papers 4
David J Poulsen
University at Buffalo
Co-authored papers 2
Xiuqian Mu
University at Buffalo, State University of New York
Co-authored papers 2
Nigam H Shah
Stanford University
Co-authored papers 1
Werner Ceusters
University at Buffalo
Co-authored papers 1
Richard H Scheuermann
J. Craig Venter Institute
Co-authored papers 1
Michael Ashburner
University of Cambridge
Co-authored papers 1
Muniswamy Madesh
Co-authored papers 1
Karen Eilbeck
University of Utah
Co-authored papers 1
William Bug
Drexel University College of Medicine
Co-authored papers 1
Cornelius Rosse
University of Washington
Co-authored papers 1
Jianmin Wang
Roswell Park Comprehensive Cancer Center
Co-authored papers 1
Amelia Ireland
Co-authored papers 1
Philippe Rocca-Serra
University of Oxford
Co-authored papers 1
Susanna-Assunta Sansone
Oxford e-Research Centre, University of Oxford
Co-authored papers 1
Barry Smith
University at Buffalo
Co-authored papers 1
Jian Feng
Co-authored papers 1
Suzanna E Lewis
Lawrence Berkeley National Laboratory
Co-authored papers 1
Neocles B Leontis
Bowling Green State University
Co-authored papers 1
Alan Ruttenberg
University at Buffalo
Co-authored papers 1
Emma Guttman-Yassky
Co-authored papers 1
Natasha B Halasa
Vanderbilt University Medical Center
Co-authored papers 1
Christopher J Mungall
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 1
Grant W Brown
University of Toronto, 1 King's College Circle
Co-authored papers 1
Patricia L Whetzel
University of Colorado Anschutz Medical Campus
Co-authored papers 1
Louis J Goldberg
University at Buffalo
Co-authored papers 1
Piotr A Mieczkowski
Co-authored papers 1
Release 1.2