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Author Details

Michael C Schatz
Johns Hopkins University
2004
153
66
PMIDPaper TitleJournal TitlePublished Year
36658279Jasmine and Iris: population-scale structural variant comparison and analysis.Nat Methods2023
38077089The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes.bioRxiv2023
37612512The complete sequence of a human Y chromosome.Nature2023
37497639Concerning the eXclusion in human genomics: the choice of sex chromosome representation in the human genome drastically affects the number of identified variants.G3 (Bethesda)2023
37425881Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy.bioRxiv2023
36993396BEATRICE: Bayesian Fine-mapping from Summary Data using Deep Variational Inference.bioRxiv2023
37251303Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like <i>bla</i><sub>KPC</sub> bearing plasmids.JAC Antimicrob Resist2023
37344528Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet.Nat Commun2023
37013830National Human Genome Research Institute Genomic Data Science Analysis, Visualization, and Informatics Lab-Space: Reaching out to Clinicians.Circ Genom Precis Med2023
36635537Approaching complete genomes, transcriptomes and epi-omes with accurate long-read sequencing.Nat Methods2023
36865318Concerning the eXclusion in human genomics: The choice of sex chromosome representation in the human genome drastically affects number of identified variants.bioRxiv2023
35235413Same-Cell Co-Occurrence of RAS Hotspot and BRAF V600E Mutations in Treatment-Naive Colorectal Cancer.JCO Precis Oncol2022
35791022Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes.Genome Biol2022
35357935A complete reference genome improves analysis of human genetic variation.Science2022
35357925From telomere to telomere: The transcriptional and epigenetic state of human repeat elements.Science2022
35446419Complete Sequence of a 641-kb Insertion of Mitochondrial DNA in the Arabidopsis thaliana Nuclear Genome.Genome Biol Evol2022
36522651Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing.Genome Biol2022
36316646Sketching and sampling approaches for fast and accurate long read classification.BMC Bioinformatics2022
35207566Artificial Intelligence and Cardiovascular Genetics.Life (Basel)2022
32766814Ribbon: intuitive visualization for complex genomic variation.Bioinformatics2021
33713372Cell wall protein variation, break-induced replication, and subtelomere dynamics in Candida glabrata.Mol Microbiol2021
33567281Clonal hematopoiesis before, during, and after human spaceflight.Cell Rep2021
33587037SNPC-1.3 is a sex-specific transcription factor that drives male piRNA expression in <i>C. elegans</i>.Elife2021
33583104Using Galaxy to Perform Large-Scale Interactive Data Analyses-An Update.Curr Protoc2021
33749660Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore-Washington metropolitan area.JCI Insight2021
34528508Local adaptation and archaic introgression shape global diversity at human structural variant loci.Elife2021
34672955Democratizing long-read genome assembly.Cell Syst2021
34149747Natural Genetic Diversity in Tomato Flavor Genes.Front Plant Sci2021
34195571Pan-genomic matching statistics for targeted nanopore sequencing.iScience2021
34109759An anchored chromosome-scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids.Plant Genome2021
33947700The genomic basis of evolutionary differentiation among honey bees.Genome Res2021
33257863Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED.Nat Biotechnol2021
33107913Sapling: accelerating suffix array queries with learned data models.Bioinformatics2021
32321164Vargas: heuristic-free alignment for assessing linear and graph read aligners.Bioinformatics2020
32068314De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays.Mol Microbiol2020
33284326iGenomics: Comprehensive DNA sequence analysis on your Smartphone.Gigascience2020
33242405Clonal Hematopoiesis Before, During, and After Human Spaceflight.Cell Rep2020
33347570Parliament2: Accurate structural variant calling at scale.Gigascience2020
32699374Author Correction: A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
32354350In memory of James Taylor: the birth of Galaxy.Genome Biol2020
32541955A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
30520198Genome-wide patterns of transposon proliferation in an evolutionary young hybrid fish.Mol Ecol2019
31842730Recovering rearranged cancer chromosomes from karyotype graphs.BMC Bioinformatics2019
31782791Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop.Gigascience2019
31661016RaGOO: fast and accurate reference-guided scaffolding of draft genomes.Genome Biol2019
31856913Paragraph: a graph-based structural variant genotyper for short-read sequence data.Genome Biol2019
31271967Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads.iScience2019
31406327Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.Nat Biotechnol2019
31292536Author Correction: Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato.Nat Plants2019
31570895The bracteatus pineapple genome and domestication of clonally propagated crops.Nat Genet2019
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Collaborators

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Co-authored papers 22
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Center for Computational Biology, Johns Hopkins University
Co-authored papers 19
Simons Center for Quantitative Biology
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Co-authored papers 11
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Broad Institute of MIT and Harvard
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Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University
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National Institute of Standards and Technology
Co-authored papers 5
Feil Family Brain and Mind Research Institute.
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Google LLC
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National Human Genome Research Institute, National Institutes of Health
Co-authored papers 4
Stanford School of Medicine
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NYS Institute for Basic Research in Developmental Disabilities .
Co-authored papers 4
University of British Columbia
Co-authored papers 4
University of Maryland, College Park
Co-authored papers 4
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Co-authored papers 4
Institute for Genome Sciences, University of Maryland School of Medicine
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Cancer Institute of New Jersey
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University of Tennessee Health Science Center
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UC Santa Cruz Genomics Institute, University of California
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