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Author Details

Rory Johnson
2005
68
41
PMIDPaper TitleJournal TitlePublished Year
36596869Long non-coding RNAs: definitions, functions, challenges and recommendations.Nat Rev Mol Cell Biol2023
36420896GENCODE: reference annotation for the human and mouse genomes in 2023.Nucleic Acids Res2023
37673946Author Correction: Tumour mutations in long noncoding RNAs enhance cell fitness.2023
37794265The status of the human gene catalogue.Nature2023
36697832Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.Nature2023
36537036A transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification.2023
37427428Assessment of the Cardiac Noncoding Transcriptome by Single-Cell RNA Sequencing Identifies , a Conserved Profibrogenic Long Noncoding RNA.2023
34533605Designing libraries for pooled CRISPR functional screens of long noncoding RNAs.Mammalian Genome2022
35619054Paired guide RNA CRISPR-Cas9 screening for protein-coding genes and lncRNAs involved in transdifferentiation of human B-cells to macrophages.BMC Genomics2022
36052265and spliced transcripts play an oncogenic role in colorectal carcinogenesis.Frontiers in Oncology2022
35532806Lessons from the functional characterization of lncRNAs: introduction to mammalian genome special issue.Mamm Genome2022
36482178Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis.Commun Biol2022
36548181Is Evolutionary Conservation a Useful Predictor for Cancer Long Noncoding RNAs? Insights from the Cancer LncRNA Census 3.2022
34788611MapToCleave: High-throughput profiling of microRNA biogenesis in living cells.Cell Rep2021
33574136Enhancing CRISPR deletion via pharmacological delay of DNA-PKcs.Genome Research2021
34316704Cancer LncRNA Census 2 (CLC2): an enhanced resource reveals clinical features of cancer lncRNAs.2021
33326074Annotation of Full-Length Long Noncoding RNAs with Capture Long-Read Sequencing (CLS).Methods Mol Biol2021
33270111GENCODE 2021.Nucleic Acids Res2021
34791665Noncoding RNAs: biology and applications-a Keystone Symposia report.Ann N Y Acad Sci2021
31681950CASPR, an analysis pipeline for single and paired guide RNA CRISPR screens, reveals optimal target selection for long non-coding RNAs.2020
32316166Human vtRNA1-1 Levels Modulate Signaling Pathways and Regulate Apoptosis in Human Cancer Cells.Biomolecules2020
30827888Hacking the Cancer Genome: Profiling Therapeutically Actionable Long Non-coding RNAs Using CRISPR-Cas9 Screening.Cancer Cell2019
30357393GENCODE reference annotation for the human and mouse genomes.Nucleic Acids Res2019
30587508Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs.Genome Research2019
30849394Global Positioning System: Understanding Long Noncoding RNAs through Subcellular Localization.Molecular Cell2019
31147707LnCompare: gene set feature analysis for human long non-coding RNAs.Nucleic Acids Research2019
29494803Capturing a Long Look at Our Genetic Library.Cell Systems2018
29795125Towards a complete map of the human long non-coding RNA transcriptome.Nat Rev Genet2018
28128360Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features.Sci Rep2017
28386015LncATLAS database for subcellular localization of long noncoding RNAs.RNA2017
29106417High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.Nat Genet2017
28253259Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion.PLoS Comput Biol2017
28033318A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies.PLoS Genetics2016
26960900Erratum to: 'DECKO: Single-oligo, dual-CRISPR deletion of genomic elements including long non-coding RNAs'.BMC Genomics2016
27090285Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells.RNA2016
24786300Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs.Eur Heart J2015
25954002Human genomics. The human transcriptome across tissues and individuals.Science2015
26212332RING Dimerization Links Higher-Order Assembly of TRIM5α to Synthesis of K63-Linked Polyubiquitin.Cell Rep2015
26423156CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis.J Mol Cell Cardiol2015
26493208DECKO: Single-oligo, dual-CRISPR deletion of genomic elements including long non-coding RNAs.BMC Genomics2015
26194102Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization.Genome Res2015
25149110Functional importance of cardiac enhancer-associated noncoding RNAs in heart development and disease.J Mol Cell Cardiol2014
24265505Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia.Genome Res2014
24850885The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs.RNA2014
22193719Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors.EMBO Journal2012
22303401The Long Non-Coding RNAs: A New (P)layer in the "Dark Matter".Front Genet2012
22588898Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.Genome Res2012
22496669A genome-wide screen for genetic variants that modify the recruitment of REST to its target genes.PLoS Genetics2012
22955988The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.Genome Res2012
22955974Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs.Genome Res2012
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Gladstone Institutes San Francisco
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