Author details

Full Name

Shiyong Liu

Affiliation

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37301066	Challenges in structural modeling of RNA-protein interactions.		2023
37186412	An updated dataset and a structure-based prediction model for protein-RNA binding affinity.		2023
35156711	Molecular insight into coordination sites for substrates and their coupling kinetics in Na /HCO cotransporter NBCe1.	Journal of Physiology	2022
34921931	Two novel RNA-binding proteins identification through computational prediction and experimental validation.	Genomics	2022
34663179	RR3DD: an RNA global structure-based RNA three-dimensional structural classification database.	RNA Biology	2021
34517213	Protein-DNA complex structure modeling based on structural template.	Biochemical and Biophysical Research Communications	2021
31173056	P3DOCK: a protein-RNA docking webserver based on template-based and template-free docking.		2020
32873321	A novel antiviral lncRNA, EDAL, shields a T309 O-GlcNAcylation site to promote EZH2 lysosomal degradation.		2020
32678300	PRIME-3D2D is a 3D2D model to predict binding sites of protein-RNA interaction.	Communications Biology	2020
30961545	RMalign: an RNA structural alignment tool based on a novel scoring function RMscore.	BMC Genomics	2019
30753596	CPPred: coding potential prediction based on the global description of RNA sequence.	Nucleic Acids Research	2019
30323214	Deep-RBPPred: Predicting RNA binding proteins in the proteome scale based on deep learning.	Scientific Reports	2018
28682144	Structural modeling of human cardiac sodium channel pore domain.	Journal of Biomolecular Structure and Dynamics	2018
30251687	Small GTPases SAR1A and SAR1B regulate the trafficking of the cardiac sodium channel Na1.5.		2018
27993780	RBPPred: predicting RNA-binding proteins from sequence using SVM.		2017
28388579	Rabies viruses leader RNA interacts with host Hsc70 and inhibits virus replication.	Oncotarget	2017
27662342	Template-Based Modeling of Protein-RNA Interactions.	PLoS Comput Biol	2016
25290691	Break CDK2/Cyclin E1 interface allosterically with small peptides.	PLoS ONE	2014
23712416	A novel protocol for three-dimensional structure prediction of RNA-protein complexes.	Scientific Reports	2013
22908909	Preorientation of protein and RNA just before contacting.	Journal of Biomolecular Structure and Dynamics	2013
23843247	Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.	Proteins	2013
24127340	The dataset for protein-RNA binding affinity.	Protein Science	2013
21745398	DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking.	BMC Bioinformatics	2011
21269517	ASPDock: protein-protein docking algorithm using atomic solvation parameters model.	BMC Bioinformatics	2011
22001016	Community-wide assessment of protein-interface modeling suggests improvements to design methodology.	J Mol Biol	2011
18812365	DOCKGROUND protein-protein docking decoy set.	Bioinformatics	2008