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Author Details

Emma K Farley
University of California
2011
18
10
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36729834Diverse logics and grammar encode notochord enhancers.Cell Rep2023
37852970Conserved enhancers control notochord expression of vertebrate Brachyury.Nat Commun2023
38009359Ciona, an ideal research organism to study the role of enhancers.Genesis2023
37848026Single-nucleotide variants within heart enhancers increase binding affinity and disrupt heart development.Dev Cell2023
37131681Conserved enhancer logic controls the notochord expression of vertebrate <i>Brachyury</i>.bioRxiv2023
340453553D genomics across the tree of life reveals condensin II as a determinant of architecture type.Science2021
33689769Enhancer grammar in development, evolution, and disease: dependencies and interplay.Dev Cell2021
31808313Functional genomic approaches to elucidate the role of enhancers during development.Wiley Interdiscip Rev Syst Biol Med2020
29610481A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.Nat Genet2018
28874753Identifying DNase I hypersensitive sites as driver distal regulatory elements in breast cancer.Nat Commun2017
28388430Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells.Cell Stem Cell2017
27155014Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers.Proc Natl Acad Sci U S A2016
27325706Regulatory Principles Governing Tissue Specificity of Developmental Enhancers.Cold Spring Harb Symp Quant Biol2015
26472909Suboptimization of developmental enhancers.Science2015
23681625Gene transfer in developing chick embryos: in ovo electroporation.Methods Mol Biol2013
22549952HOT DNAs: a novel class of developmental enhancers.Genes Dev2012
21576465Doublesex and mab-3-related transcription factor 5 promotes midbrain dopaminergic identity in pluripotent stem cells by enforcing a ventral-medial progenitor fate.Proc Natl Acad Sci U S A2011
21527010Effects of in ovo electroporation on endogenous gene expression: genome-wide analysis.Neural Dev2011
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Collaborators

Katrina M Olson
University of California
Co-authored papers 6
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University of California, USA Institute for Genomic Medicine
Co-authored papers 3
Brandon J Mannion
Co-authored papers 2
Axel Visel
Co-authored papers 2
Christopher DeBoever
Stanford University
Co-authored papers 2
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Stanford University School of Medicine
Co-authored papers 1
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University of California San Diego
Co-authored papers 1
Collin Melton
Stanford University School of Medicine
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Ana Bojorquez-Gomez
University of California
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Oncode Institute, Netherlands Cancer Institute
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Michael Ku Yu
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Shamil R Sunyaev
Harvard Medical School
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Erez Lieberman Aiden
Co-authored papers 1
Daniel Ortiz Velez
University of California San Diego
Co-authored papers 1
Guorong Xu
Chinese University of Hong Kong
Co-authored papers 1
Andrea L Richardson
Co-authored papers 1
Jason F Kreisberg
University of California San Diego
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Erin N Smith
Department of Pediatrics and Rady's Children's Hospital, University of California
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Paola Benaglio
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Naoki Nariai
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John Paul Shen
The University of Texas MD Anderson Cancer Center
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Hui Huang
Co-authored papers 1
Adam Klie
University of California
Co-authored papers 1
Kevin Chen
University of California
Co-authored papers 1
Katherine Licon
University of California San Diego
Co-authored papers 1
Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 1
Suhas S P Rao
Co-authored papers 1
Kristen Jepsen
Institute for Genomic Medicine, University of California San Diego
Co-authored papers 1
Stephanie I Fraley
University of California San Diego
Co-authored papers 1
Michael Snyder
Stanford University
Co-authored papers 1
Release 1.2