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Author Details

Taner Z Sen
USDA, Crop Improvement Genetics Research Unit, Western Regional Research Center
2004
56
18
PMIDPaper TitleJournal TitlePublished Year
37971715Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium.Database (Oxford)2023
36529716Co-expression pan-network reveals genes involved in complex traits within maize pan-genome.BMC Plant Biol2022
35616118GrainGenes: a data-rich repository for small grains genetics and genomics.Database (Oxford)2022
35407001GrainGenes: Tools and Content to Assist Breeders Improving Oat Quality.Foods2022
35719692Predicting Tissue-Specific mRNA and Protein Abundance in Maize: A Machine Learning Approach.Front Artif Intell2022
35860541Capturing Wheat Phenotypes at the Genome Level.Front Plant Sci2022
35717172G4Boost: a machine learning-based tool for quadruplex identification and stability prediction.BMC Bioinformatics2022
33999024mirMachine: A One-Stop Shop for Plant miRNA Annotation.J Vis Exp2021
33879057FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.BMC Bioinformatics2021
33846409Genome-wide discovery of G-quadruplexes in barley.Sci Rep2021
33635499LncMachine: a machine learning algorithm for long noncoding RNA annotation in plants.Funct Integr Genomics2021
34638743Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing.Int J Mol Sci2021
32295768Genome-Wide Discovery of G-Quadruplexes in Wheat: Distribution and Putative Functional Roles.G3 (Bethesda)2020
33763204Building a successful international research community through data sharing: The case of the Wheat Information System (WheatIS).F1000Res2020
31900107Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize.BMC Plant Biol2020
32810130JBrowse Connect: A server API to connect JBrowse instances and users.PLoS Comput Biol2020
30407532MaizeGDB 2018: the maize multi-genome genetics and genomics database.Nucleic Acids Res2019
31210272GrainGenes: centralized small grain resources and digital platform for geneticists and breeders.Database (Oxford)2019
30903182PedigreeNet: a web-based pedigree viewer for biological databases.Bioinformatics2019
30612037Structural dynamics of lytic polysaccharide monoxygenases reveals a highly flexible substrate binding region.J Mol Graph Model2019
29688387SNPversity: a web-based tool for visualizing diversity.Database (Oxford)2018
30239679AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.Database (Oxford)2018
27787818Predicting Protein Secondary Structure Using Consensus Data Mining (CDM) Based on Empirical Statistics and Evolutionary Information.Methods Mol Biol2017
28605768Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation.Database (Oxford)2017
27462324A Clade-Specific Arabidopsis Gene Connects Primary Metabolism and Senescence.Front Plant Sci2016
26432828MaizeGDB update: new tools, data and interface for the maize model organism database.Nucleic Acids Res2016
27899149The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize.BMC Syst Biol2016
24757168An adaptable pentaloop defines a robust neomycin-B RNA aptamer with conditional ligand-bound structures.RNA2014
25230644Sampling errors: Aristotle's suspect statistical skills.Nature2014
25304126A computational platform to maintain and migrate manual functional annotations for BioCyc databases.BMC Syst Biol2014
23431393Predicting the binding patterns of hub proteins: a study using yeast protein interaction networks.PLoS One2013
24070146Endoglucanases: insights into thermostability for biofuel applications.Biotechnol Biofuels2013
22856639Molecular simulation of fibronectin adsorption onto polyurethane surfaces.Langmuir2012
22731517A rigid network of long-range contacts increases thermostability in a mutant endoglucanase.J Biomol Struct Dyn2012
21291533Thermostability in endoglucanases is fold-specific.BMC Struct Biol2011
22253616POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data.Int J Plant Genomics2011
22066537Dynamics of endoglucanase catalytic domains: implications towards thermostability.J Biomol Struct Dyn2011
21624896MaizeGDB: curation and outreach go hand-in-hand.Database (Oxford)2011
21565781The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video.Database (Oxford)2011
20124413The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps.Bioinformatics2010
20627860Choosing a genome browser for a Model Organism Database: surveying the maize community.Database (Oxford)2010
21847242MaizeGDB becomes 'sequence-centric'.Database (Oxford)2009
18178655Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA.Biophys J2008
18769488MaizeGDB: The maize model organism database for basic, translational, and applied research.Int J Plant Genomics2008
19029596The ribosome structure controls and directs mRNA entry, translocation and exit dynamics.Phys Biol2008
17932935Predicting the order in which contacts are broken during single molecule protein stretching experiments.Proteins2008
17660202Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: combining GOR V and Fragment Database Mining (FDM).Bioinformatics2007
17672675Generation and enumeration of compact conformations on the two-dimensional triangular and three-dimensional fcc lattices.J Chem Phys2007
16863590Functional clustering of yeast proteins from the protein-protein interaction network.BMC Bioinformatics2006
17710199The Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models.J Chem Theory Comput2006
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Collaborators

Carson M Andorf
USDA-ARS, Corn Insects and Crop Genetics Research Unit
Co-authored papers 17
Lisa C Harper
Corn Insects and Crop Genetics Research Unit, USDA Agricultural Research Service
Co-authored papers 11
Mary L Schaeffer
University of Missouri
Co-authored papers 11
Ethalinda K S Cannon
USDA-ARS, Corn Insects and Crop Genetics Research Unit
Co-authored papers 8
Carolyn J Lawrence
Iowa State University
Co-authored papers 8
Margaret R Woodhouse
USDA-ARS, Corn Insects and Crop Genetics Research Unit
Co-authored papers 5
Laurel Cooper
Oregon State University
Co-authored papers 3
Clay L Birkett
Cornell University
Co-authored papers 3
Gerard R Lazo
Western Regional Research Center, Crop Improvement and Genetics Research Unit
Co-authored papers 3
Eric Yao
Western Regional Research Center, Crop Improvement and Genetics Research Unit
Co-authored papers 3
Rex T Nelson
USDA, Corn Insects and Crop Genetics Research Unit, Iowa State University
Co-authored papers 2
Christine G Elsik
University of Missouri
Co-authored papers 2
Trent E Seigfried
Co-authored papers 2
Monica F Poelchau
USDA Agricultural Research Service
Co-authored papers 2
Marie-Ang??lique Laporte
Co-authored papers 2
Tanya Z Berardini
Carnegie Institution for Science
Co-authored papers 2
Vasant Honavar
Co-authored papers 2
Andrew D Farmer
National Center for Genome Resources
Co-authored papers 2
Ian Holmes
University of California berkeley
Co-authored papers 2
Stephen P Ficklin
Washington State University
Co-authored papers 2
Ariel Fern??ndez
University of Florida
Co-authored papers 1
Pierre Larmande
University Montpellier
Co-authored papers 1
Marcela K Tello-Ruiz
State University of New York at Old Westbury
Co-authored papers 1
Robert M Buels
University of California berkeley
Co-authored papers 1
Sunita Kumari
Co-authored papers 1
Clement Jonquet
University of Montpellier, CNRS
Co-authored papers 1
Daureen Nesdill
University of Utah
Co-authored papers 1
Victor Unda
Washington State University
Co-authored papers 1
Bradford Condon
University of Tennessee
Co-authored papers 1
Jill L Wegrzyn
University of Connecticut
Co-authored papers 1
Release 1.2